Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23274g00001 GTCCCAAGGTCTTCTAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAATCGTGTGGCAGACAATTTTAGAACTAGTGCACGGGAAAAAGGTTTCCAAATTCGTGATTTTGAATACAGCCCAGAAACACATGAGGGCCGAAAGCAGGAGTTGGATAAATTGATGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTATACCAGTTATGGAGAGGTTTTCAGCTCATGGATGCACTTTTGTGCTGTGCGCTTATTTTCTGAAAGCATTCTGAGATATGGATTGCCGCCGTCTTTCTTGGCATGCGTCTTAGCTCCATCTGTAAAAGCCGAAAAGAAAGTACGTTCAATCCTTGAAGGCTTGAGTGATAGCTCAAACAGGCAAGTAGCTGATTAA 423 0.4208 VPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHEGRKQELDKLMQDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRLFSESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNRQVAD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23274g00001 140 Gene3D - 9 105 - -
Trme23274g00001 140 Pfam V-ATPase subunit C 1 129 IPR004907 GO:0033180|GO:0046961|GO:1902600
Trme23274g00001 140 CDD V-ATPase_C 1 130 IPR004907 GO:0033180|GO:0046961|GO:1902600
Trme23274g00001 140 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 137 IPR004907 GO:0033180|GO:0046961|GO:1902600
Trme23274g00001 140 SUPERFAMILY Vacuolar ATP synthase subunit C 1 136 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23274g00001 1 135 Primary Pumps ATPases(2) AT1G12840 82.963 1.92e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23274g00001 K02148 - gmx:100813963 261.151