Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23272g00001 GAGGTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACAAAACCAACAATACTCTTTGGGATGGACTATCGACACTTATACCAGATTCACACTCAAGTTCATGTGAAGTAGTGAATGATGTTGGCTTCACTATCGATGCTGCTCAGTTTGGTAATGTGGGGAGATTCATCAACCACAGTTGCTCCCCTAATCTCTATGCTCAGAATGTCCTTTATGATCATCATGACATCAGGATTCCTCACGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGAGTTACGATTACAATTATATGATAGACCAAGTCCGTGATTCTGATGGCAATATCAAAAAGAAGTACTGCTATTGTGGTTCTGTGGAGTGTACTGGTAGGTTGTATTAA 429 0.3963 EVLEDKEAEQRTGNDEYLFDIGNNKTNNTLWDGLSTLIPDSHSSSCEVVNDVGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDIRIPHVMLFAAENIPPLQELSYDYNYMIDQVRDSDGNIKKKYCYCGSVECTGRLY 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23272g00001 142 Gene3D SET domain 1 142 IPR046341 -
Trme23272g00001 142 ProSiteProfiles Post-SET domain profile. 126 142 IPR003616 -
Trme23272g00001 142 ProSiteProfiles SET domain profile. 1 112 IPR001214 GO:0005515
Trme23272g00001 142 SUPERFAMILY SET domain 1 139 IPR046341 -
Trme23272g00001 142 Pfam SET domain 29 112 IPR001214 GO:0005515
Trme23272g00001 142 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 135 - -
Trme23272g00001 142 SMART set_7 4 118 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23272g00001 Trme-Chr23272 88 516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23272g00001 14 142 EF-hand Containing Proteins AT5G13960 46.667 1.71e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme23272g00001 SET 6.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23272g00001 K11420 - gmx:100803378 262.692