Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23204g00001 GTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCAACCGGGCAACACAGGGCTCGACCCCTCTCAGACCTCTTTTTTCCAGGTGCTCAATATCCCAACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTGGAACTTATTAAGAAAGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTATCCAAGTTAGCCATTAGGCCCTTTTCATACGGGCTTGTTGTCCTCTCTGTTTACGATAATGGTTCAGTGTTTAGCCCCGAGGTTCTTGACCTTACTGACGATGACCTTGTTGCGAAGTTTGCTAGTGGTGTGTCAATGGTTGCTTCACTTTCATTGGCCATCTCCTACCCAACACTTGCAGCTGCCCCTCATATGTTTGTCAATGCATACAAGAATGTTCTTGCACTTGCTGTTGTTACAGAATATTCTTTCCCTGAGGCAGACAAGGTTAAGGAGTACCTGAAGGACCCGAGTAAATTTGCCGTAGCTGCAGTTGCTGCCCCAGCTGCTGCTGCTTCTGGTGGTGCCCCTGCTGCTGCCAAGGAGGAGGCAAAGAAGGAAGAGCCCGAAGAAGAGTCCGATGATGACATTGGCATGGGTCTGTTTGGTGATGATTAG 645 0.4822 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLAIRPFSYGLVVLSVYDNGSVFSPEVLDLTDDDLVAKFASGVSMVASLSLAISYPTLAAAPHMFVNAYKNVLALAVVTEYSFPEADKVKEYLKDPSKFAVAAVAAPAAAASGGAPAAAKEEAKKEEPEEESDDDIGMGLFGDD 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23204g00001 214 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 195 - -
Trme23204g00001 214 MobiDBLite consensus disorder prediction 197 214 - -
Trme23204g00001 214 Pfam Insertion domain in 60S ribosomal protein L10P 5 74 IPR040637 -
Trme23204g00001 214 Pfam 60s Acidic ribosomal protein 125 211 - -
Trme23204g00001 214 Gene3D - 2 78 IPR043164 -
Trme23204g00001 214 FunFam 60S acidic ribosomal protein P0 4 77 - -
Trme23204g00001 214 MobiDBLite consensus disorder prediction 183 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23204g00001 Trme-Chr23204 65 881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23204g00001 1 212 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 80.189 6.54e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23204g00001 K02941 - vvi:100250067 327.405