Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme231557g00001 GAGGGTGCGAAAAGGGACGCGCTTGCGGCGATTTTGAATTTAGCAGCGGACCGTGAGACGGTGGCGAGGTTAGTTGAGAGTGGGGCGGTGGAGATGACGGCAGGGATTATGGCAGTGATGCCAGAGGAGGCGGTAACGATACTTGAAGCAGTCGTGAAGCGTGGAGGATTGGTAGCTGTTGCGGCGGCTTTTGTGGGGATAAAGAAATTGGGGACGGTTTTGAGGGAGGGATCGGAGAGGGCACGAGAGAGTGCCGCGGCGACACTTGTGACAATGTGTAGGAAAGGTGGATCGGAGATTGTAGCGGAACTAGCTGGGATTCATGGTGTTGAAAGGGTGATTTGGGAGTTGATGGCAGTGGGGAGTGTGAGAGGTAGGAGGAAGGCGGCAACATTGTTG 399 0.5539 EGAKRDALAAILNLAADRETVARLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAGIHGVERVIWELMAVGSVRGRRKAATLL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme231557g00001 133 PANTHER U BOX DOMAIN-CONTAINING 3 133 - -
Trme231557g00001 133 Gene3D - 1 133 IPR011989 -
Trme231557g00001 133 SUPERFAMILY ARM repeat 4 133 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme231557g00001 Trme-Chr231557 2 400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme231557g00001 2 133 U-box Gene Family AT5G01830 61.364 2.07e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme231557g00001 - - tpra:123922727 224.942