Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme231549g00001 ATGACACAACAATTGACAGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGTTGATAACTGCAAGAATGCCAATAGAAAGAGGGAAATACATTGTGAAAATGGTTACGAATACTATTGACAAGACAAAAGAATTATACGGTCTTGACGAAATCCTTGATCCTGTCACTGATTTTAAGGCATCGTTGAAGAGTTTTGAAAAGTTTATGGATCTTACAATGAAATGTGTTGAAGAGTCAAGT 249 0.3494 MTQQLTEKSDVYSFGVLMLELITARMPIERGKYIVKMVTNTIDKTKELYGLDEILDPVTDFKASLKSFEKFMDLTMKCVEESS 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme231549g00001 83 PANTHER OS01G0253100 PROTEIN 1 82 - -
Trme231549g00001 83 Pfam Protein tyrosine and serine/threonine kinase 3 46 IPR001245 GO:0004672|GO:0006468
Trme231549g00001 83 SUPERFAMILY Protein kinase-like (PK-like) 2 80 IPR011009 -
Trme231549g00001 83 Gene3D Transferase(Phosphotransferase) domain 1 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme231549g00001 Trme-Chr231549 1 249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme231549g00001 1 81 Receptor kinase-like Gene Family AT5G49760 56.098 2.61e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme231549g00001 PK_Tyr_Ser-Thr 8.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme231549g00001 - - gmx:100780344 126.716