Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23139g00001 ATGTACATGAACGATTCTTACTCAAGTGAGAGTTACAAAAAATACTTCCTTGATTCACCAACAGAAGAACTGATAGAACCATCTAGTTCTGGCATATCAGGAAATTCGGTTCACGCTGATAGTGATTCTTCTTACCAGCTCAGAGCTAATTCTGGAGGTTCTATGGTCACTGATAACCCATTTGATAATTATGTATCGTCTACAAGGAACCGTGATGCCTATCAGTCAAACTTTCAATCAGATTTGTTTGAAAATGAGAGCCCAGATTGCTTTGAATTTGATGGTGAAATGCGATTGAAACTACAAGAATTGGAGAGGGCATTGCTTGGTGACAATAATGATGATTGCGATGATGATGGGGAAAACATATTTAGGACTGTACAGAGCATGGATATTGATCCTGACTTTGCTGATTGCGCCAATCCTGCTCAGAACATGTCACTTCACGACTCACCAAAGGAATCTTTGTCATCAGATTCCAATCTTAGTTGCAGCAGCAGCTGCAAAGAGATATCGCAAAAATCTCCTCGGACCCCGAAGCAGTTACTCTATGAATGTGCTAGTGCACTTTCAGAAGGAAATGAAGTAAAAGCCTCAGCTATGATAGACGATCTCAGGCAGATGGTTTCGATTCAGGGAGATCCTTCCACAAGAATTGCAGCCTACATGGTGGAAGGACTTGCAGCTCGTTTGGCTTCGTCCGGAAAATCTATTTATAAAGCTTTGAGATGCAAGGAACCTCCTTCTTCCGATCGTCTAGCAGCAATGCAGATACTATTCGAGGTGTGCCCGTGTTTTAAATTTGGTTTCATTGCTGCAAATGGTGCTATTGCTGAGGCTATAAAAGATGATAAGAAGGTTCACATAATTGATTTTGATATCAACCAAGGAAGTCAATATATAACCCTAATACAAACACTTGCTTCTAGGCCAGGGAAACCGCCTTTTGTGAGATTGACCGGCGTTGATGATCCTGAATCAGTGCAGCGATCTGTTGGAGGCCTAAGTATTATAGGACAGAGACTTGAAAAGCTAGCAGAAGTACTCGGATTGCCATTTGAATTCCGTGCTGTAGCGTCAAGTTCTTCAGTTGTTACTCCATCAATGCTCAACTGTCATCCCGGGGAAGCAATTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGCGACGAAAGTGTGTCAACGGTAAATGAGCGAGACCAGCTTCTTCGCATGGTTAAGAGCCTTAATCCAAAACT 1241 0.423 MYMNDSYSSESYKKYFLDSPTEELIEPSSSGISGNSVHADSDSSYQLRANSGGSMVTDNPFDNYVSSTRNRDAYQSNFQSDLFENESPDCFEFDGEMRLKLQELERALLGDNNDDCDDDGENIFRTVQSMDIDPDFADCANPAQNMSLHDSPKESLSSDSNLSCSSSCKEISQKSPRTPKQLLYECASALSEGNEVKASAMIDDLRQMVSIQGDPSTRIAAYMVEGLAARLASSGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAIAEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPFVRLTGVDDPESVQRSVGGLSIIGQRLEKLAEVLGLPFEFRAVASSSSVVTPSMLNCHPGEAIVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23139g00001 414 MobiDBLite consensus disorder prediction 23 44 - -
Trme23139g00001 414 ProSiteProfiles GRAS family profile. 170 414 IPR005202 -
Trme23139g00001 414 MobiDBLite consensus disorder prediction 144 159 - -
Trme23139g00001 414 Pfam GRAS domain family 180 414 IPR005202 -
Trme23139g00001 414 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 158 414 IPR005202 -
Trme23139g00001 414 MobiDBLite consensus disorder prediction 135 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23139g00001 Trme-Chr23139 55 1295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23139g00001 4 414 GRAS Transcription Factor Family AT1G21450 58.273 5.18e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme23139g00001 GRAS 2e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23139g00001 - - lja:Lj0g3v0277879.2 587.03