Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23138g00001 ATGCTCGGGCAAGGTGGATTTGGGCCTGTTTATAAGGGTATACTTAGTGATGGCATGGAAGTGGCAATCAAGAGGCTCTCAACTTGTTCTGAGCAGGGCTCAGAGGAATTCATTAATGAGGTTATGCTGATATTGAAACTTCAACACAAAAATCTTGTGAAGCTTTTAGGATTTTGTGTTGATGGAGAAGAGAAGCTTCTTGTTTATGAATATTTGCCTAATGGTAGCCTTGATGTCGTCCTTTTCGAGCAAGGTGCACAGCTCGATTGGACGAAACGAGTTGATATAATAAACGGAATAGCAAGGGGAATTCTTTATCTTCATGAAGATTCTAGACTTCAAATAATACATAGAGATCTAAAAGCAAGTAACGTGTTGTTGGACCATGACATGAATCCAAAGATTTCAGACTTTGGAATGGCAAGGATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTCGGCACATATGGATATATGGCTCCAGAGTATGCAATGGAGGGTATATATTCCATNNNNNNTNNNNNNNNNNTNNNNNNNNNNCTATTGCTCGAGATCATTACAGGGAAACGTAACACAGGTTTCTATTACTCCAAAAGCACTCCTAGCCTTCTAGCATATGCATGGCATCTATGGAATGATGGAAAAGGATTGGAGTTAAGGGATCCGTTGTTATTATGCCCGGAAGACCAGTTTTTGAGA 711 0.3882 MLGQGGFGPVYKGILSDGMEVAIKRLSTCSEQGSEEFINEVMLILKLQHKNLVKLLGFCVDGEEKLLVYEYLPNGSLDVVLFEQGAQLDWTKRVDIINGIARGILYLHEDSRLQIIHRDLKASNVLLDHDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGIYSXXXXXXXXXXLLLEIITGKRNTGFYYSKSTPSLLAYAWHLWNDGKGLELRDPLLLCPEDQFLR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23138g00001 237 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Trme23138g00001 237 Pfam Protein kinase domain 2 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23138g00001 237 SUPERFAMILY Protein kinase-like (PK-like) 1 231 IPR011009 -
Trme23138g00001 237 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 72 161 - -
Trme23138g00001 237 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
Trme23138g00001 237 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23138g00001 237 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 233 - -
Trme23138g00001 237 Gene3D Transferase(Phosphotransferase) domain 1 72 235 - -
Trme23138g00001 237 SMART serkin_6 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23138g00001 237 FunFam Uncharacterized protein 8 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23138g00001 Trme-Chr23138 1 1237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23138g00001 1 228 Receptor kinase-like Gene Family AT4G11530 61.905 8.92e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme23138g00001 Pkinase 5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23138g00001 - - gmx:100798666 398.667