Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2307g00001 TATAAAGCTTTTGATGAAGTAGATGGAATCGAAGTTGCTTGGAACCGAATTTGTATAGAGGATGTTATGCAATCACCCCAAAATTTGGAGAAGTTGTATTCTGAGGTTCATCTCCTCAAGTCACTGAAACACGAAAATATCATTAAGTTCTATAGCTCTTGGGTGGATGAAAAGACCAGGACTATCAATATGATAACTGAATTGTTCACGTCTGGGAGTTTGAGGCAGTATCGTAAGAAACATAAGAATGTGGATATGAAGGCAATCAAGAACTGGGCGAGGCAGATTCTTCGTGGCTTGTGCTTTCTGCACAGTCACAATCCTCCTGTTATTCACAGGGATCTAAAATGTGATAACATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTCGGATTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTTATCGGTACTCCGGAATTCATGGCCCCAGAGCTTTATGAAGAAGAATACAATGAACTTGTTGACATATATTCCTTTGGCATGTGTATCTTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGCAAAAATCCGGCGCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTTCTCTTGCTAAAGTGAATGATCCTGAAGTGAAGCAATTTATAGAGAAGTGTTTAGTTCCAGCATCTATGAGATTGCCTGCATCTGAACTGCTGAAAGACCCATTCCTCGCAACTGGAAATGCGAAGGAGATCTATCATGATCCCCTGCTGCTGCCTAATTCCCCGACTAAATCAATGAATCCACCAACTTGTGAGCCCCATCCCATGGAGATAGATTCAAACCTCAGGCATACATCACATGGCTCCTCTGTGGAAAGAATTAAAGAAACTTCTCAAGTTTCAATTCTTGATCTCATGAGGAAGACAGAGAACAATGAATTTAGGTTAAGAGGGGAGAAGAATGCTGAGCGTACAATTTCACTTACACTGCGAATTGCTGATGCTAATGGTGGAGCTAGGAATATCCATTTTCCATTCTATATCGATTCCGACACAACAATTTCAATTGCTGAGGAGATGGTGGAACATCTTGAGCTCAAGGATGAGGATGTAGCTGTCATTGCTGAGCTAATACACAACATGATTTTTGAGCTTGTGCCTAACTGGAAACCCTTGTGCGAGAACTTCTCATCTGGAACAGATCATTTGTACAGTCCTTCAGAAGCTCAGAATGGTGAACAGTTAAACTGCCATTGGTCATTGGGATCAAATAACTTTGATATGAAGGCAATGTATGAGGATTTAGGTCACTCACAGCTTGACGGGGAAGATCAGGACAAACAAGAATCTGTTTCATCAGATATTTCAGCTGAGTATGGGATTGCGGTTGCCACTGATTCTAAAGGTGTAGAGCCTGATTGTTTTATTCTTCATGAATGTTGCAAGGGATCCCATGGCTTAAATTCCAATTCAGATGTCAGGATTTGTGGTCAAGAAGATGGAAACAATAATCAATCAGAGAACTCAGCAGTCTCATGGTCCAGTCCATCCATAAACTTTGACATGTCAAGCAAATGCTCTCTTACTCAACAGGAAAAAGATCATTTAAACGAGCTACAGTTGGAGCTTGAAGCAATTGATATCCAGTATCAGCAAAGTTTTCGTGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAAAATGTCAAAAAGAGATGGACTTCAAAGAAGTTATCAGTTATATGA 1743 0.4068 YKAFDEVDGIEVAWNRICIEDVMQSPQNLEKLYSEVHLLKSLKHENIIKFYSSWVDEKTRTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHNPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPASLAKVNDPEVKQFIEKCLVPASMRLPASELLKDPFLATGNAKEIYHDPLLLPNSPTKSMNPPTCEPHPMEIDSNLRHTSHGSSVERIKETSQVSILDLMRKTENNEFRLRGEKNAERTISLTLRIADANGGARNIHFPFYIDSDTTISIAEEMVEHLELKDEDVAVIAELIHNMIFELVPNWKPLCENFSSGTDHLYSPSEAQNGEQLNCHWSLGSNNFDMKAMYEDLGHSQLDGEDQDKQESVSSDISAEYGIAVATDSKGVEPDCFILHECCKGSHGLNSNSDVRICGQEDGNNNQSENSAVSWSSPSINFDMSSKCSLTQQEKDHLNELQLELEAIDIQYQQSFRELVKMREEAIENVKKRWTSKKLSVI 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2307g00001 580 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Trme2307g00001 580 Pfam Protein kinase domain 2 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2307g00001 580 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2307g00001 580 CDD STKc_WNK 1 243 - -
Trme2307g00001 580 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 567 - -
Trme2307g00001 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Trme2307g00001 580 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 326 382 IPR024678 GO:0004674|GO:0005524
Trme2307g00001 580 Gene3D Transferase(Phosphotransferase) domain 1 69 250 - -
Trme2307g00001 580 Coils Coil 536 556 - -
Trme2307g00001 580 SMART serkin_6 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2307g00001 580 FunFam Probable serine/threonine-protein kinase WNK1 1 67 - -
Trme2307g00001 580 Gene3D - 324 410 - -
Trme2307g00001 580 FunFam probable serine/threonine-protein kinase WNK9 69 248 - -
Trme2307g00001 580 SUPERFAMILY Protein kinase-like (PK-like) 1 289 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2307g00001 Trme-Chr2307 180 2297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2307g00001 1 580 MAP Kinase Kinase Kinase AT5G41990 51.541 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme2307g00001 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2307g00001 K08867 - gmx:100783717 865.529