Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22998g00001 TATGCCTGCTGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGCAAATCTACATTCTCAGATGTTTTCCTTGTCTTTTTTGCTCTCAACATGGCAGCTATGGGAGTCTCTCAATCTGGAACCTTGCTCCCTGATTCAAGTAATGCACAAGGTGCTACTGCGTCCGTATTTNNNNNNNNNNANNNNNNNTCACAAATAGACCCTAGTGATGAATCTGGAATGACACTGGAAGAAGTCAAGGGAGAAATTGAGTTTAACCATGTTAGTTTCAAGTATCCTATTAGACCCGATGTTCAAATATTCAGAGATCTTTGCTTGAACATTCATAGCGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTACTACAAAGATTCTATAACCCTGACTCAGGACACATTACACTTGACGGAATAGAAATTCAAAGGATGCAAGTGAAATGGCTGAGACAACAGATGGGACTGGTAAGCCAAGAGCCAGTTCTTTTCAATGATACGGTTCGAGCCAATATTGCATACGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTGTAGCTGCGGCAGAACTTGCAAATGCTCACCAGTTCATAAGTAGTTTGCAGACGGGTTATGACACAATAGTAGGCGAGAGAGGAATTCAATTATCTGGGGGACAGAAGCAACGGGTGGCAATTGCACGAGCAATGGTGAAGAATCCAAAAATACTGCTACTAGATGAAGCAACAAGCGCACTTGATGCTGAGTCTGAAAAGGTGGTACAAGATGCACTTGACCGAGTTATGGTGGAGCGAACAACAATAATAGTGGCTCATAG 839 0.4207 YACCFYAGARLVEDGKSTFSDVFLVFFALNMAAMGVSQSGTLLPDSSNAQGATASVFXXXXXXSQIDPSDESGMTLEEVKGEIEFNHVSFKYPIRPDVQIFRDLCLNIHSGKTVALVGESGSGKSTVISLLQRFYNPDSGHITLDGIEIQRMQVKWLRQQMGLVSQEPVLFNDTVRANIAYGKGGDATEAEIVAAAELANAHQFISSLQTGYDTIVGERGIQLSGGQKQRVAIARAMVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22998g00001 279 FunFam ABC transporter B family member 1 73 279 - -
Trme22998g00001 279 PANTHER ABC TRANSPORTER B FAMILY 1 279 IPR039421 -
Trme22998g00001 279 Pfam ABC transporter 103 251 IPR003439 GO:0005524
Trme22998g00001 279 SMART AAA_5 110 279 IPR003593 GO:0016887
Trme22998g00001 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 279 IPR027417 -
Trme22998g00001 279 ProSitePatterns ABC transporters family signature. 223 237 IPR017871 GO:0005524|GO:0016887
Trme22998g00001 279 Gene3D - 73 279 IPR027417 -
Trme22998g00001 279 Gene3D ABC transporter type 1, transmembrane domain 1 59 IPR036640 GO:0005524|GO:0016020
Trme22998g00001 279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 83 279 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22998g00001 Trme-Chr22998 102 1268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22998g00001 1 279 Calmodulin-binding Proteins AT2G36910 52.143 1.00e-89 288