Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22959g00001 CAACCAAAGAGGCATTTATTGACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTTGCTGGAGATTCCGTTCTTTTTATCAGAGATGAAAAACAGCAACTGCTTTTAGGTTTRAGGCGTGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATCTCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCCAGCCCTTCCGAATTTGTTATTCCGTTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACGGAGGAGTCTGGCGTACGTCGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGATTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTCTCGATTTGGGACATTGAGCCAGTAGTGACTCCTTTCTATATCTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCTGGAATGCCAGGTAATAAGAGTTACACTCTTGATTAG 615 0.426 QPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPRQPGMPGNKSYTLD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22959g00001 204 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 196 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme22959g00001 204 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Trme22959g00001 204 Gene3D - 1 43 IPR015300 -
Trme22959g00001 204 Gene3D - 105 176 - -
Trme22959g00001 204 Pfam Auxin response factor 68 150 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme22959g00001 204 SUPERFAMILY DNA-binding pseudobarrel domain 2 71 IPR015300 -
Trme22959g00001 204 FunFam Auxin response factor 105 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22959g00001 Trme-Chr22959 148 1039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22959g00001 1 199 B3 DNA Binding Superfamily AT1G19220 87.437 7.40e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22959g00001 K14486 - tcc:18588238 376.711