Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22951g00001 ATGCTACAACTTCATAAAGGGATAGTAAGATCATTGGACTTCCACCCAACACAAGGAATTCTTTGCTCGTCCAATACTGATGTAGTTGAAGTGTGGAATCTTGTTCAGCGTGTTAGGACGGACCACTCTATGGCAGGTGTCAGCATAGTGAGATTTCAGCCTGGATCGGGGATGCTTTTGGCAGTTGCCAATCAAAATGTTATCAACATACTTGATTTTCAGACATTTATTGTTCAGAATTGTCTCCGGGGGCACGTCAAATATATTTGTTCCTTGTGTTGGGATGTCACTGGGCAAACAATCGCCTCTGTCAGTGAAGATGGTTTGCGTGTCTGGTCGCTTTCTATGGGCGGACAGTGCTTATATCACTATCCATCAAAAGGGAAGATGTTTAAGTCCGTTATATTTCATCCTCGATACCGTAACGTCTTAGTTGTTGGTGGTTTTCAG 450 0.4311 MLQLHKGIVRSLDFHPTQGILCSSNTDVVEVWNLVQRVRTDHSMAGVSIVRFQPGSGMLLAVANQNVINILDFQTFIVQNCLRGHVKYICSLCWDVTGQTIASVSEDGLRVWSLSMGGQCLYHYPSKGKMFKSVIFHPRYRNVLVVGGFQ 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22951g00001 150 Gene3D - 1 150 IPR015943 GO:0005515
Trme22951g00001 150 Pfam WD domain, G-beta repeat 80 112 IPR001680 GO:0005515
Trme22951g00001 150 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 2 150 IPR044716 GO:0003714
Trme22951g00001 150 SMART WD40_4 1 33 IPR001680 GO:0005515
Trme22951g00001 150 SMART WD40_4 75 113 IPR001680 GO:0005515
Trme22951g00001 150 SUPERFAMILY WD40 repeat-like 2 148 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22951g00001 Trme-Chr22951 103 870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22951g00001 2 114 U-box Gene Family AT2G33340 23.967 5.10e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22951g00001 - - tpra:123919071 289.656