Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme229085g00001 ATGGTTCACGTTTCATATTATCGAAACTATGGGAAAACCTTCAAGAAGCCACGTCGTCCATACGAGAAGGAGCGTTTGGATGCTGAGTTGAAGCTNNNNNNNNNNANNNNNNNNNNANNNNNNAGGGAGCTATGGAGAGTTCAATACGCTCTTAGCCGTATCCGTAACAATGCAAGGAATCTGTTGACACTGGATGAGAAGAACCCTCGTCGGATCTTTGAGGGTGAAGCACTTCTAAGGAGAATGTTTAAGCATGGTCTTCTTGAT 267 0.4007 MVHVSYYRNYGKTFKKPRRPYEKERLDAELKLXXXXXXXXXRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFKHGLLD 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme229085g00001 89 Coils Coil 42 43 - -
Trme229085g00001 89 Coils Coil 23 32 - -
Trme229085g00001 89 PANTHER 30S 40S RIBOSOMAL PROTEIN 9 89 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trme229085g00001 89 SMART Ribosomal_S4_2 8 89 IPR001912 GO:0019843
Trme229085g00001 89 Pfam Ribosomal protein S4/S9 N-terminal domain 8 86 IPR001912 GO:0019843
Trme229085g00001 89 SUPERFAMILY Alpha-L RNA-binding motif 12 86 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme229085g00001 1 89 Cytoplasmic Ribosomal Protein Gene Family AT5G15200 78.652 1.69e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme229085g00001 K02997 - gmx:100790098 150.984