Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22899g00001 ATGTGTCAAGAAAATGTTTTAAATGAGACAGAACATGATTCTATTAGAATCCAGGGTTATGCTAACATCTACTCTTTGCAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACCGGAGGACGGTTTGCAAAGAAAACTGATGGGGAGGGCTCAAACAACTCAGGAAAGGATAATGGCTCTGGTCCAGTCCTGTCATCACAGTCAATTAGTTCATCTGGTTCAGAACCTTTGCCTTCGGATTCTGCCGAAACCTGGAACTCTCCCAACATGCGACAAGATGCAAGAGCATCAAATGAAAATGGTGGTGGCTCCTACCATAGTAACAACAATGGTATGCAGTCTTCAAGGTATCAAGGTGAAAGAGTGGATGACGGCGGGGACTGTTCCGGGCAGCTACGTGGAAGCATATCCTCGAACGAGGCATCTCAGAGGCGACTTGCAATTCAGTAG 471 0.4607 MCQENVLNETEHDSIRIQGYANIYSLQPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMRQDARASNENGGGSYHSNNNGMQSSRYQGERVDDGGDCSGQLRGSISSNEASQRRLAIQ 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22899g00001 156 SMART cbf3 1 52 IPR001289 GO:0003700|GO:0006355
Trme22899g00001 156 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 27 49 IPR001289 GO:0003700|GO:0006355
Trme22899g00001 156 MobiDBLite consensus disorder prediction 54 124 - -
Trme22899g00001 156 Gene3D - 3 54 - -
Trme22899g00001 156 MobiDBLite consensus disorder prediction 34 156 - -
Trme22899g00001 156 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 27 107 IPR001289 GO:0003700|GO:0006355
Trme22899g00001 156 ProSiteProfiles NF-YA/HAP2 family profile. 1 52 IPR001289 GO:0003700|GO:0006355
Trme22899g00001 156 MobiDBLite consensus disorder prediction 138 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22899g00001 1 156 CCAAT-HAP2 Transcription Factor Family AT3G20910 43.114 1.25e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme22899g00001 CBFB_NFYA 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22899g00001 K08064 - pvy:116130416 142.51