Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22889g00001 CTTTTTCATCTTCATGATTCTGGTGTTGACCAATCTTTCATTGATACACTTCCTGTGTTTCTTTACAAAACTATTATTGGATTGAAAGTTAACCCTTTTGATTGTGCTGTTTGTTTATGTGAATTTGAACTTGAAGATAAGCTTAGAGCTAATTTGCTTCATGATTTCAACACAAGTAGTAATTGTTCACCTTTAGTTCTTGTTCTTGAATCTGGTAGTGATAGTTCAAGAGAAATTGATCAAGAAAGAGAGGCTGAAATTGCTACAGCTAGTGTTGTTGGTAGGACTGGTTCTGTTATGTCAACAAATTCTTATNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGTGATGGTGTGGAGAAAGTGGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGAAGGTGAAGGAAGTAGCAGCAACAATGTGGATGATAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTACAGGTACCAATTAGAACTCCAATGAAGCAACAATTGAATAAGAAGAAAAATGTTTTGCCTTTGATTCCAGGACATAGACAAGCAATGTCAGAATGTGAYTGTGAATCTAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGTTAGAACTGAGGATACTGTTGTTAAAGGTAGTACTAGTGAGCCTGCTGCTATTGATAGGAGTAGAAAAGAGAGTTTCTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAGAAATGGTGATGTAGCTGATTCATCTAGAAGAGCTTTTTCATTTAGGTTTCCATTACAAAGTAATGTTGGTGAAGATTTGAAGGGTAAGAATGGTAGATTTCATACAAGGAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGTAGCAAGTGAATTTAGTGGTTATGATGAAGAAAATCAAAGCTGTTATAGTATGGATTCTTCTCAACCTAGAGCACCTTCTTTTGCTAGAAGAACTTTGCTTTGGCTCACAGGAAGACAGAATAAGGTTGTTCATTCATCATCTGCTTCTACCACCCTTTAG 1122 0.328 LFHLHDSGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFELEDKLRANLLHDFNTSSNCSPLVLVLESGSDSSREIDQEREAEIATASVVGRTGSVMSTNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVEKVVTVKLGKYRNVDGEGEGSSSNNVDDRRCFSMGSFAYIMDETSSLQVPIRTPMKQQLNKKKNVLPLIPGHRQAMSECDCESRRDFKFASFDSVRTEDTVVKGSTSEPAAIDRSRKESFSISKIWLRGKKDKRNGDVADSSRRAFSFRFPLQSNVGEDLKGKNGRFHTRSTVSEMDFGKWENGVASEFSGYDEENQSCYSMDSSQPRAPSFARRTLLWLTGRQNKVVHSSSASTTL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22889g00001 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22889g00001 Trme-Chr22889 1 1206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22889g00001 1 371 C3H Transcription Factor Family AT2G18650 35.904 3.35e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22889g00001 - - gmx:100797283 438.728