Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22882g00001 ATGATAAAGTACCATAAGAACCTAACTTCCAGAGGATACCGAGCTCTTATTGGTGATCATGACATGTGTGTTCCATATACGGGGAGTCAAGCATGGACGAGATCAATAGGATACAAGATTGTTGATGAATGGAGGCCTTGGCTATCCAATGGTCAAGTTGTTGGGTACACTCAAGGATATGACAACAATCTTACTTTTCTGACTATAAAGGGAGCTGGCCATACTGTTCCAGAATATAAACCACAAGAGGCATTTGATTTTTATAAACGTTTTCTCGCTGGATTGAAGATATGA 294 0.398 MIKYHKNLTSRGYRALIGDHDMCVPYTGSQAWTRSIGYKIVDEWRPWLSNGQVVGYTQGYDNNLTFLTIKGAGHTVPEYKPQEAFDFYKRFLAGLKI 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22882g00001 97 Pfam Serine carboxypeptidase 1 93 IPR001563 GO:0004185|GO:0006508
Trme22882g00001 97 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 81 IPR001563 GO:0004185|GO:0006508
Trme22882g00001 97 ProSitePatterns Serine carboxypeptidases, histidine active site. 64 81 IPR033124 GO:0004185
Trme22882g00001 97 FunFam Carboxypeptidase 1 94 - -
Trme22882g00001 97 SUPERFAMILY alpha/beta-Hydrolases 2 96 IPR029058 -
Trme22882g00001 97 Gene3D - 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22882g00001 Trme-Chr22882 142 1080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22882g00001 2 94 Calmodulin-binding Proteins AT2G22960 52.632 5.99e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22882g00001 K16296 - gmx:100792057 189.119