Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme228792g00001 CCCAGACTTGAAGAATCTGATGATGGTTCCAGATCACCAATAATCAACAAAAGGATAACGAATCTCCAAAGTTATGAATCTGACGAAGAAACCTGCCAAACTCCTGATCCTGAACCACCCCATGATGTCCCAAAAGGTTACTTGGCTGTCTATGTTGGACCCGAGCTTCGACGGTTCATTATTCCAACTAGCTACCTTAGCCATTCCTTATTCAAAAAGTTGCTTGAAAAGGCCGCTGAGGAATACGGATTTGATCAGAGCGGCGGGCTCACGATACCGTGTGAGATTGAGACCTTTAAATACCTCATCAAATGCATCGAGAACCAAGAGAAAGAACAACATGATGACTTCTCGTGTAAGTTATTAGCATTATTACTTTCTCTCACTTTATATATGTAA 399 0.416 PRLEESDDGSRSPIINKRITNLQSYESDEETCQTPDPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKKLLEKAAEEYGFDQSGGLTIPCEIETFKYLIKCIENQEKEQHDDFSCKLLALLLSLTLYM 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme228792g00001 132 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 102 IPR003676 GO:0009733
Trme228792g00001 132 MobiDBLite consensus disorder prediction 1 20 - -
Trme228792g00001 132 Pfam Auxin responsive protein 33 106 IPR003676 GO:0009733
Trme228792g00001 132 MobiDBLite consensus disorder prediction 25 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme228792g00001 Trme-Chr228792 3 401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme228792g00001 12 120 Calmodulin-binding Proteins AT5G20810 75.455 4.05e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme228792g00001 K14488 - cpap:110808074 176.407