Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22872g00001 ATGGGTATTCCTCTCCTAAGTGGCACTTGTTTGAGTTGCAACAGAACTAGTGATGTAAATCCACCTGTCTACAAATCTAGTAATCACCAAGGTATCAGTATTAATATTGTTCAAATTGTGATGATTGAACTTGGATCCTCAATATTGATTTATGTTGTGCTGGTAATAACAATACTAATGTATCTCCGTAGAAAGAAATTGAAGAGGGCCTCTGATATTAAGAATAAATTTTTTAATGGAAGAGGAAATATTGAATTCATAAATAACAGTGATTACGAATTAAAGATCTCAACTGAAAAGGAGATATTTGCCTTTCAAGAGCTAGTGTTGGAGGCTACAGAGAACCTAAAAGATGAGTATATTATTGGGAGAGGAGCACATGGTATTGTGTACAAAGCCATAATTGGTCAACAGGTTTTTGCTGTAAAGAAGCTTGANNNNTNNNNNNNNNNTNNNNNNNNNNTAATTATCATGCGGAACGAAATTAAAGTCCTTGGGATCATTAAGCATCGAAATTTGATCAAATATGATGGCTTCTGGATTGGAGAAGACTATGGTTTAGTCTTGTATGAATTCATGGAAAATGGAAGCCTTCATGATATTTTGCACGAAAAGAAACCTCCACCACTCTTAACGTGGAACGTTCGGTGTAAGATAGCGGCTGGAATTGCTCAAGGATTAGCATATCTCCATTATGATTGCGTTCTACCAATACTTCACCGAGACATCAAACCAAAGAACATACTTGTTAATGACAATATGGAACCTGTTATAGCTGATTTTGGCACTGCCCTATGCAAGAAGCTGTTTGAGGATTCTAATAGTTATTCTGAAACCAGGAAAATGCTTTCGTCGCGTGTTGTTGGCACCCCTGGCTATATTGCACCGGAGAATGCATATGATATAGTGCCGGGAAGAATGTCTGATGTATATAGCTACGGAGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAATTATTAGTTCCGTCTATAGATGATGAG 1002 0.3623 MGIPLLSGTCLSCNRTSDVNPPVYKSSNHQGISINIVQIVMIELGSSILIYVVLVITILMYLRRKKLKRASDIKNKFFNGRGNIEFINNSDYELKISTEKEIFAFQELVLEATENLKDEYIIGRGAHGIVYKAIIGQQVFAVKKLXXXXXXXXXXIIMRNEIKVLGIIKHRNLIKYDGFWIGEDYGLVLYEFMENGSLHDILHEKKPPPLLTWNVRCKIAAGIAQGLAYLHYDCVLPILHRDIKPKNILVNDNMEPVIADFGTALCKKLFEDSNSYSETRKMLSSRVVGTPGYIAPENAYDIVPGRMSDVYSYGVVLLELITRKKLLVPSIDDE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22872g00001 334 Pfam Protein kinase domain 119 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22872g00001 334 Gene3D Transferase(Phosphotransferase) domain 1 98 333 - -
Trme22872g00001 334 FunFam Os07g0541700 protein 193 290 - -
Trme22872g00001 334 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 327 - -
Trme22872g00001 334 SMART serkin_6 116 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22872g00001 334 SUPERFAMILY Protein kinase-like (PK-like) 105 326 IPR011009 -
Trme22872g00001 334 ProSiteProfiles Protein kinase domain profile. 116 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22872g00001 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22872g00001 Trme-Chr22872 25 1181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22872g00001 109 325 Receptor kinase-like Gene Family AT1G73080 53.881 1.46e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme22872g00001 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22872g00001 - - mtr:11434252 391.734