Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22871g00001 ATGGCAGTAGTAGCAGCTCCCAAGAAAACCAACTCAATCAACAAAAAAGATAACCCAAATCTTCTCTTAGGTCGTTTCGAATTAGGTAAACTCCTTGGCCATGGAACTTTCGCNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCAATTAAGATCATAAGCAAAGACAAAATCCTCAAAAGCGGTTTAGTTTCACACATCAAACGTGAAATCTCCATTCTCCGCCGTGTTCGACATCCTAACATAGTTCAACTTTTTGAAGTCATGGCTACAAAGACAAAGATCTACTTCGTTATGGAATATGTACGAGGTGGTGAACTTTTCAATAAGGTTGCTAAAGGTAGGTTAAAAGAAGAAGTTGCAAGAAAATATTTTCAACAATTGATTTGTGCTGTTGGATTTTGTCATGCTAGAGGTGTTTATCATAGAGATTTAAAACCTGAAAATTTGTTACTTGATGAAAATGGTAATCTTAAAGTTTCGGATTTTGGATTAAGTGCTGTGTCTGATGAAATTAAACAAGATGGGTTGTTTCATACTTTTTGTGGTACACCTGCTTATGTTGCTCCTGAGGTTTTGTCTAGAAAAGGTTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTACCTTTTCATGATGCTAATAATGTTATGGTTATGTATAAGAAGATTTATAAAGGTGATTTTAGATGTCCTAGATGGTTTTCACCTGAACTTGTTAATCTTCTTACTAGGCTTCTTGATATTAAGCCTCATACTAGGATTTCGATTCCGGAGATTATGGAGAATCGTTGGTTTAAGATAGGTTTTAAGAGTATTAAGTTTTATGTTGAGGATGATGTTGTTTGTAATGTTGATTCTCTTGAACTTGATGATGGTGNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGATGATCATAGTGATGAGGTGTTGGAATCAGTATCGGAATCGGAATGGGATCCTGAGGTTTTGAGTAGAAGGAATAACCGTGCTCGTGCTTCGATGCCGAGGCCTGCGAGTTTGAATGCTTTTGATATTATATCGTTTTCGCAAGGTTTTGATCTTTCTGGTTTGTTTGAGGAAAAGGGTGATGAAGCAAGGTTTGTGTCTAGTGCATCGGTGCCGAAGATTCTATCGAAATTGGAGGAAGTTGCTCAATTGGTTAGGTTCAATGTAAGGAAAAAAGATTGCAGG 1260 0.3421 MAVVAAPKKTNSINKKDNPNLLLGRFELGKLLGHGTFAXXXXXXXXXXXXXXAIKIISKDKILKSGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLICAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDEIKQDGLFHTFCGTPAYVAPEVLSRKGYDGAKVDIWSCGVVLFVLMAGYLPFHDANNVMVMYKKIYKGDFRCPRWFSPELVNLLTRLLDIKPHTRISIPEIMENRWFKIGFKSIKFYVEDDVVCNVDSLELDDGXXXXXXXXXXXXXXXXXDDHSDEVLESVSESEWDPEVLSRRNNRARASMPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSASVPKILSKLEEVAQLVRFNVRKKDCR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22871g00001 420 Gene3D Transferase(Phosphotransferase) domain 1 16 310 - -
Trme22871g00001 420 ProSiteProfiles NAF domain profile. 358 382 IPR018451 GO:0007165
Trme22871g00001 420 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22871g00001 420 SMART serkin_6 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22871g00001 420 FunFam Non-specific serine/threonine protein kinase 16 316 - -
Trme22871g00001 420 Coils Coil 326 331 - -
Trme22871g00001 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Trme22871g00001 420 Gene3D Kinase associated domain 1, KA1 360 420 - -
Trme22871g00001 420 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 416 - -
Trme22871g00001 420 SUPERFAMILY Protein kinase-like (PK-like) 22 282 IPR011009 -
Trme22871g00001 420 Pfam NAF domain 360 416 IPR004041 GO:0007165
Trme22871g00001 420 ProSiteProfiles Protein kinase domain profile. 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22871g00001 420 CDD CIPK_C 364 418 - -
Trme22871g00001 420 FunFam Aurora kinase A 18 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22871g00001 Trme-Chr22871 20 1279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22871g00001 8 420 CBL-interacting serine-threonine protein kinases AT4G18700 68.825 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme22871g00001 Pkinase 6.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22871g00001 - - gmx:100790133 583.948