Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2286g00001 ATGGTGACCATGCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTATGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACAATGATATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGTGTGGCAGGTGGACTTATCTCCTTGCTAGGCTGTGCTGATGTTGATATACAGGATCTTCTGGAATTGTCAAATGAATTTTCATTGGCGCCATATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATCAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGATTTTGACTGACCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCATAGAGGCACTTACCAAGTATCTTTCACTGGGTCCACAAGATGCAATTGAAGAAGCTGCTACAGATCTGTTAGGAATTTTGTTTAGTAGTGCTGAGATAAGGAAACATGAGTCAGCATTTGGTGCTGTAACTCAACTTGTAGCTGTGCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCCTTGGAAAGTTTATTTTTGGCTGACAACATTAGAAATGCAGAGACAGCCCGACATGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAACATGCTGCGATTGCTGCGTTAGTTAAGTTACTGAGTGAAAATCCTTCAAGAGCACTGGCTGTTGCTGATGTTGAGATGAATGCCATTGATGTTCTTTGCAGAATCCTTTCATCAGACTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGTTCTTTTTGGAAATACAAGGATTCGATCCACAATGGCTGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTGAGTGAGTTTAGTCCAGCTCATCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGGTGATGAGCAATTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGAAGGAACTTTGTACTTCATGAGGCCATTTCCAGAGCACTGGTCAAGTTAGGAAAAGATCGACCTGCTTGTAAAATGGAAATGGTGAAATCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTCTGTGCAGCATTTGCTGAATTGTTACGTATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGACAAGAATTTGGGCCCGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCGCAATGCCGTGCTGATTACACATTAACTTCTCACCAAGCTATTGAACCACTCATCCCCTTGCTTGATTCTCCAATAGAAGCAGTGCAACAGTTGGTTGCTGAGCTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAGGGATCCAGTGACACAGCAAGTAATTGGACCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAGAGAGCTTTGAAGGCCCTTGTCAGTATTGCAATTGTATGGCCAAATGAAATTGCAAAAGAGGGAGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGACCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAATTCCCGTTGCTGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGAGCACAATTAGTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGAAACTAGCGCAGCCGCAGAGGCAATGGCTGAAAGTGGGGCTATAGAGGCTCTCTTGGAGCTCCTTAGATCTCATCAGTGTGAGGACACTGCTGCAAGACTCTTAGAAGTATTGCTTAACAATGTAAAGATTAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACTCAAGCACAGCAAGCAAGGTTATTAGCGACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAGCTGATGCAGTCTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTCATTGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTAGTGGGGTTCAGGTTATGCTGGATCTGATTGGTTCAGGTGATCCTGAAACATCTGTTCAGGCAGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCGAGTGAAACAGTCAGAGCAATAACCG 2566 0.4287 MVTMQIDYKEDSSMWICAMLLAILFQDRDIIRAHATMISIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGVAGGLISLLGCADVDIQDLLELSNEFSLAPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTDLARDCPSNKIVMVESGAIEALTKYLSLGPQDAIEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRAARYSAAKALESLFLADNIRNAETARHAVQPLVEILNTGLEREQHAAIAALVKLLSENPSRALAVADVEMNAIDVLCRILSSDCSMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVGDEQLAELVAAHGAVIPLVGLLFGRNFVLHEAISRALVKLGKDRPACKMEMVKSGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPIEAVQQLVAELLSHLLLEEHLQRDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIAIVWPNEIAKEGGVVEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEIPVAVLVRLLQSGSESTISGALNALLVLESDDETSAAAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEDQPTEEMKVIAICALQNLVMYSRSNKRAVAEASGVQVMLDLIGSGDPETSVQAAMFIKLLFSNHTIQEYASSETVRAIT 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2286g00001 855 Gene3D - 469 854 IPR011989 -
Trme2286g00001 855 Gene3D - 4 121 IPR011989 -
Trme2286g00001 855 Gene3D - 122 333 IPR011989 -
Trme2286g00001 855 Gene3D - 334 457 IPR011989 -
Trme2286g00001 855 SUPERFAMILY ARM repeat 519 846 IPR016024 -
Trme2286g00001 855 SUPERFAMILY ARM repeat 265 630 IPR016024 -
Trme2286g00001 855 SUPERFAMILY ARM repeat 134 335 IPR016024 -
Trme2286g00001 855 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 135 179 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 168 209 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 337 377 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 672 710 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 420 460 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 378 418 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 505 546 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 548 587 IPR000225 GO:0005515
Trme2286g00001 855 SMART arm_5 798 838 IPR000225 GO:0005515
Trme2286g00001 855 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 4 855 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trme2286g00001 855 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 319 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2286g00001 Trme-Chr2286 61 2626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2286g00001 136 397 U-box Gene Family AT1G71020 30.037 2.19e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2286g00001 - - lja:Lj6g3v0525130.1 1478