Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2284g00001 ATGCTCAGATTTTGGAGGATCAGACGTGTCAAGCAATTCTTCACAAGGCTGGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCCGGGTGCTTGTATTACATGCTAGCTGATATGTACCCTCATGAAGGAAAGACATGGATTGGAGCTGTGATTCCAAACTTTAGAGAGACAAGCCCTCGAATCCGATATATTTCAGCCATTTACTGGTCCATCACTACCATGACAACTGTTGGTTATGGTGACCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTACATGCTCTTCAACCTTGGTCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTTTGCCGAAACCGGTTGCCTCCAAGGTTAAAAGAACATATCCTAGCTTACATGTGTTTGAGATTTAAGGCAGAGAGCTTGAATCAACATGAACTAATTGAACAGCTACCAAAGTCAATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGCGTCTCAAAAGAAATCCTTTTATCCCTAGTTGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATAATGCAAAATGAATCACCAGATGATGTTTATATTATAGTGTCAGGAGAAGTAGAGATCATTGATAGTGTTATAGAGAAAGAGAGAACTTTAGGGACTCTAACAACAGGAGACATGTTCGGAGAAGTTGGTGCGCTTTGTTGTAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAGCTTCTGAGTGTGAAAACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAATATACTAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATTTGAGTATCAAAGATTTAATGGTGGAGAATGTGGAAGAAGAGGACCCTAACATGGCCGTGAATTTGTTAACTGTGGCCAGCACAGGTAATGCTGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCAAAAGGGAAAACTCCATTG 1167 0.3993 MLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHEGKTWIGAVIPNFRETSPRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEHILAYMCLRFKAESLNQHELIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMKAEYIPPREDVIMQNESPDDVYIIVSGEVEIIDSVIEKERTLGTLTTGDMFGEVGALCCRPQSFTYRTKTLTQLLSVKTNTLIEAMQIKKEDNILILKNFLQHFKQLKDLSIKDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2284g00001 389 PANTHER POTASSIUM CHANNEL AKT1 1 389 IPR045319 GO:0005249|GO:0006813
Trme2284g00001 389 CDD CAP_ED 209 312 IPR000595 -
Trme2284g00001 389 SUPERFAMILY cAMP-binding domain-like 136 327 IPR018490 -
Trme2284g00001 389 SMART cnmp_10 209 326 IPR000595 -
Trme2284g00001 389 SUPERFAMILY Voltage-gated potassium channels 2 169 - -
Trme2284g00001 389 Pfam Cyclic nucleotide-binding domain 229 312 IPR000595 -
Trme2284g00001 389 Gene3D - 1 132 - -
Trme2284g00001 389 Gene3D Jelly Rolls 176 351 IPR014710 -
Trme2284g00001 389 ProSiteProfiles cAMP/cGMP binding motif profile. 209 328 IPR000595 -
Trme2284g00001 389 FunFam Potassium channel KAT2 197 333 - -
Trme2284g00001 389 Pfam Ion transport protein 1 138 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2284g00001 Trme-Chr2284 719 2680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2284g00001 1 389 Ion Channels AT4G22200 77.099 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2284g00001 K21867 - gmx:100798422 729.554