Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22826g00001 ATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAGCTTAGGTCTAATTTTCTCGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCACCTGGACGCAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATCGCCCAGGTCACCTATGAGTTGAATGTTCTCGGTACTAGAGGCCCGCGAAGGATGAATTGCACTATGTACTCGGTCCCTGCCTCTTCCCTTGAGCCAGGTGGCATTGTCCCAGGCCAGCCAGAGCTCATTCAGCGCTCACTTGAGGATTCTTTCCGTAGTTTATCCTTTGCAAGATCAATCGATAATTCAACCGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGTGCCAGCAATGAAGACGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCGAGATGGCACGAACAGCTGCAATGTTGGTGCCTTAACTTTAGAGGAAGAGTGACTGTCGCGTCCGTCAAGAATTTTCAACTGATTGCTGCAACACAGCCTACAGCTGGTGCTCCTCATGCAACAGCAGGACCTGCGCCATCACAGCCGGGACAGTCCGACCATGACAAGATTATTCTTCAGTTTGGTAAGGTCGGCAAGGATATGTTTACCATGGACTACCGATACCCTCTCTCGGCATTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACTAAATTGGCATGTGAATAG 777 0.4723 MDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSVPASSLEPGGIVPGQPELIQRSLEDSFRSLSFARSIDNSTEFSSCRFSDIMGASNEDEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPTAGAPHATAGPAPSQPGQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22826g00001 258 PRINTS Tubby superfamily signature 156 173 IPR000007 -
Trme22826g00001 258 PRINTS Tubby superfamily signature 13 37 IPR000007 -
Trme22826g00001 258 PRINTS Tubby superfamily signature 215 234 IPR000007 -
Trme22826g00001 258 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Trme22826g00001 258 PRINTS Tubby superfamily signature 236 258 IPR000007 -
Trme22826g00001 258 PRINTS Tubby superfamily signature 62 89 IPR000007 -
Trme22826g00001 258 SUPERFAMILY Tubby C-terminal domain-like 2 258 IPR025659 -
Trme22826g00001 258 ProSitePatterns Tub family signature 2. 243 258 IPR018066 -
Trme22826g00001 258 ProSitePatterns Tub family signature 1. 174 187 IPR018066 -
Trme22826g00001 258 Gene3D Tubby Protein; Chain A 1 252 IPR025659 -
Trme22826g00001 258 PANTHER TUBBY-RELATED 1 256 - -
Trme22826g00001 258 Pfam Tub family 1 253 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22826g00001 Trme-Chr22826 286 1216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22826g00001 1 258 TUB Transcription Factor Family AT1G43640 68.302 3.69e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme22826g00001 Tub 9.1e-92 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22826g00001 K19600 - pop:7468777 445.662