Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22824g00001 GAGCAAGATTGTGAATTTGGTATCGGTCATTTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCACTTCAAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGTCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTTAAAGATCCTAATTATACCGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCGTTCATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGAGAGTTTCCGTGGAAAGCCATGTTTGGATTGGAACAGGCGAATGCACATTGCTGTCGGGGCTGCACGAGGGCTTTTGTATTTGCACGAGCAGTGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGAGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTACGCGGCACTGTAGGACACATTGCTCCTGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTCGGCATATTACTTTTGGAGCTCATAACAGGACAAAAGGCACTGGATGCTGGAAATGTTCAGGTCCAAAAGGGAATGATTCTTGATTGGTTTCATGAAATTAATGCCTTATATCTCTCTACCCTTAAGTTTGCATTGACCGTAGATTTTGAGTAA 795 0.4164 EQDCEFGIGHLKRFSFRELQIATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRESFRGKPCLDWNRRMHIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVQVQKGMILDWFHEINALYLSTLKFALTVDFE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22824g00001 264 Pfam Protein kinase domain 27 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22824g00001 264 FunFam Somatic embryogenesis receptor kinase 1 1 101 - -
Trme22824g00001 264 SUPERFAMILY Protein kinase-like (PK-like) 9 247 IPR011009 -
Trme22824g00001 264 PIRSF ILK 11 242 - -
Trme22824g00001 264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trme22824g00001 264 FunFam Somatic embryogenesis receptor-like kinase 1 102 256 - -
Trme22824g00001 264 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Trme22824g00001 264 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Trme22824g00001 264 SMART serkin_6 26 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22824g00001 264 ProSiteProfiles Protein kinase domain profile. 26 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22824g00001 264 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 234 - -
Trme22824g00001 264 Gene3D Transferase(Phosphotransferase) domain 1 102 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22824g00001 Trme-Chr22824 122 1192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22824g00001 1 262 Receptor kinase-like Gene Family AT5G45780 79.008 1.96e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme22824g00001 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22824g00001 - - ccaj:109812711 465.307