Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22806g00001 GTGACAAAGCATGAGGATGCACCAGAAGGTGAATGGAAGGGATGGAATTGGAGATCAGAAGGAGACTTATTAGTAAATGGTGCATTTTTTACAGCATCAGGAGCAGAAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACTACTGGTGCTGGTGTACTCACTTGTAGAAAGGGTTCTAGTTGCTGA 225 0.4267 VTKHEDAPEGEWKGWNWRSEGDLLVNGAFFTASGAEGASSSYARASSLSARPSSLVGTITTGAGVLTCRKGSSC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22806g00001 74 Gene3D - 1 67 IPR012334 -
Trme22806g00001 74 SUPERFAMILY Pectin lyase-like 5 65 IPR011050 -
Trme22806g00001 74 PRINTS Pollen allergen Amb family signature 45 68 IPR018082 -
Trme22806g00001 74 PRINTS Pollen allergen Amb family signature 15 39 IPR018082 -
Trme22806g00001 74 PANTHER PECTATE LYASE 18-RELATED 1 72 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22806g00001 Trme-Chr22806 297 521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22806g00001 1 74 Polysaccharide Lyase AT4G13710 67.568 8.35e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22806g00001 K01728 - gmx:100101868 113.235