Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22805g00001 ATGCCAACAACATCAACAACAACGTTTGGTGGTGTAGAAACTTCAAATGCAGACTCATCATCCAAACATACCCCCCGAGAATCTCGTGACCTTCCTCCTTTACTCTCTTCTTCTTACCCAATCACTCTTAAGTTTATGGACGTGGGATACCGATTGAAGATAGAGAACAAAAAAGGAAACGGAGGGTGCATCAAGAATTTCTTTACNNNNNNNNTNNNNNNNNNNTCTGATCAAAGATCAACGCAAGAGCGAATCATACTTAACGGGGTAACGGGAATAGCTTACCCAGGAGAGATCCTAGCCATTCTAGGTCCATCAGGAAGCGGAAAATCAACGCTGCTAAACTCACTCGCAGGAAGACTTCATGGAAACGGCCTCACAGGAACAATTCTCGCTAACTCATCAAAACTCAACAGAACGGTTCTCCGTCGAACCGGATTCGTTACACAAGACGATATTCTCTACCCTCATTTAACCGTCCGCGAGACGCTGATTTTCTGCTCCATGCTTCGTCTCCCGAGAAAGCTTCCTCGGGAAACGAAAATAGCAGCAGCAGAATCAGCGATCGCGGAGCTTGGTTTAACGAAGTGCGAGAACACTATAATTGGTAACAGTTTCATTCGCGGTGTTTCTGGTGGAGAGAGGAAGCGAGTGAGTATTGCTCATGAGATGTTAGTAGATCCGGCGTTATTGATCTTGGATGAGCCTACATCTGGATTGGATTCAACGGCGGCGCATCGGCTTGTGTCGACGCTGGGATCGTTGGCGAGGAAGGGGAAGACGGTGGTAACGTCGGTGCATCAGCCATCGAGTCGTGTATACCAGATGTTTGATAAAGTGATTGTGTTATCAGAAGGTCAGTGTATGTACTACGGGAAAGGAACCGACGCTATGAGATATTTTGAGTCGGTTGGATTCGCGCCATCATTTCCGGTAAATCCGGCGGATTTTCTGCTCGATCTTGCTAACG 970 0.4619 MPTTSTTTFGGVETSNADSSSKHTPRESRDLPPLLSSSYPITLKFMDVGYRLKIENKKGNGGCIKNFFTXXXXXXSDQRSTQERIILNGVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHGNGLTGTILANSSKLNRTVLRRTGFVTQDDILYPHLTVRETLIFCSMLRLPRKLPRETKIAAAESAIAELGLTKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAHRLVSTLGSLARKGKTVVTSVHQPSSRVYQMFDKVIVLSEGQCMYYGKGTDAMRYFESVGFAPSFPVNPADFLLDLAN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22805g00001 323 MobiDBLite consensus disorder prediction 1 33 - -
Trme22805g00001 323 FunFam ABC transporter G family member 22 74 304 - -
Trme22805g00001 323 Pfam ABC transporter 88 238 IPR003439 GO:0005524
Trme22805g00001 323 Pfam ABC-2 type transporter 267 321 IPR043926 GO:0140359
Trme22805g00001 323 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 310 IPR003439 GO:0005524
Trme22805g00001 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 303 IPR027417 -
Trme22805g00001 323 Gene3D - 78 304 IPR027417 -
Trme22805g00001 323 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 322 - -
Trme22805g00001 323 SMART AAA_5 96 287 IPR003593 GO:0016887
Trme22805g00001 323 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22805g00001 Trme-Chr22805 110 1275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22805g00001 86 286 Calmodulin-binding Proteins AT2G36910 30.244 4.33e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22805g00001 K05681 - gmx:100812127 513.457