Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22736g00001 ATGGATTTGGAGACATTCCACCTTCCAAGAAGAACTAATACAGTTCCACAATCCACTCCGGAGATAATCGACCTCGANNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTCATTAATCTTTCTGATGAAGAAGATGACGATGACATTAAGATCCTCAATTTCATCCCCAAAACTATCGCTTTTGGAAAACGTAAAAGATTCGAAAATGGAGAGTCTTCAAATTCCAGAGCCGCGCCATTTGTTTGCGAAATCTGCACTGACACTAAAACGATTAAGGATGCTTTCTACATCAGTGGTTGCTCTCACGCTTATTGCTCAGATTGCGTGGCAATGTACATCGGTTCCAAACTTGATGATAACATCACAAACATTGGGTGTCCGGTTCCCGGGTGCAATGGCTTACTAGAAGCGCAGTTTTGCCGTTCGATTCTTAAGCCTGAGGTTTTTGAACGGTGGGGTAAGGCATTGTGTGAGGCTTTGATCGATGTATCGGAGAAGTTTTATTGTCCTTTTGCTGACTGTTCCGCTCTTTTGATCAACGACGGCAAAGAGGCTGTTGGGAATACTAAATGTCCTCATTGTAATAGGATGTTTTGCGCACGATGTAAGGTTCCATGGCATAATGGAATGGAATGCAGCGAGTTCGAGAAGCTGAATGCGGACGAGAGGGGGAAAGAATATGATATGTTGGTTAAACTTGCGAATAAGAAGAATTGGCAGCGATGCCCCAAATGCAGAATTTATGTTGCCAAAAATAGGGGCTGCACACACATGACCTGCAG 788 0.415 MDLETFHLPRRTNTVPQSTPEIIDLXXXXXXXXXXXXXXINLSDEEDDDDIKILNFIPKTIAFGKRKRFENGESSNSRAAPFVCEICTDTKTIKDAFYISGCSHAYCSDCVAMYIGSKLDDNITNIGCPVPGCNGLLEAQFCRSILKPEVFERWGKALCEALIDVSEKFYCPFADCSALLINDGKEAVGNTKCPHCNRMFCARCKVPWHNGMECSEFEKLNADERGKEYDMLVKLANKKNWQRCPKCRIYVAKNRGCTHMTC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22736g00001 262 SUPERFAMILY RING/U-box 158 219 - -
Trme22736g00001 262 ProSiteProfiles TRIAD supradomain profile. 80 262 IPR044066 -
Trme22736g00001 262 Pfam IBR domain, a half RING-finger domain 157 214 IPR002867 GO:0008270
Trme22736g00001 262 SUPERFAMILY RING/U-box 226 262 - -
Trme22736g00001 262 Coils Coil 40 45 - -
Trme22736g00001 262 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Trme22736g00001 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Trme22736g00001 262 FunFam RBR-type E3 ubiquitin transferase 79 165 - -
Trme22736g00001 262 SMART ibrneu5 152 214 IPR002867 GO:0008270
Trme22736g00001 262 ProSiteProfiles Zinc finger RING-type profile. 84 130 IPR001841 -
Trme22736g00001 262 Pfam Zinc finger, C3HC4 type (RING finger) 84 129 IPR018957 GO:0046872
Trme22736g00001 262 SUPERFAMILY RING/U-box 81 164 - -
Trme22736g00001 262 Coils Coil 25 25 - -
Trme22736g00001 262 CDD BRcat_RBR_unk 165 217 - -
Trme22736g00001 262 Gene3D - 212 262 - -
Trme22736g00001 262 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 262 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22736g00001 Trme-Chr22736 344 1131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22736g00001 48 262 C3H Transcription Factor Family AT2G19610 25.000 2.26e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22736g00001 K11975 - gmx:100803898 309.686