Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22733g00001 TGTTTTGAAGACTTGGACCGTTTATCTGTTCGCCTTTTGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACGAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCTGAAGTTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGTCTGCACTCCTTACGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACCTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTG 574 0.4111 CFEDLDRLSVRLLESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEVKSPFEEAAQIVKKVYSVLPDYDKIVSALLTDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22733g00001 191 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 154 162 IPR016059 GO:0003909
Trme22733g00001 191 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 14 190 - -
Trme22733g00001 191 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 89 190 - -
Trme22733g00001 191 Pfam ATP dependent DNA ligase domain 130 190 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trme22733g00001 191 Gene3D - 2 129 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme22733g00001 191 Gene3D DNA ligase/mRNA capping enzyme 130 191 - -
Trme22733g00001 191 Pfam DNA ligase N terminus 2 63 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme22733g00001 191 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 14 120 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22733g00001 Trme-Chr22733 57 1304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22733g00001 14 189 Core DNA Replication Machinery Family AT1G08130 76.136 4.21e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22733g00001 K10747 - gmx:100783155 334.724