Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22710g00001 CGCGGACCTGAAATCATTGTCGAGTGGCCAACAAGGATGAAAATAGCAATTGGAATCACCAATGGTCTATGTTGCCTTCACAATCAAGAGAATATTGTACATGGCAATCTGACCTCAAGCAACATACTATTAGATGAGCAAACAAATCCTCACATCACCGATTTTGGTCTTTCAAGACTAATGACAACTTCTGCCAACACCAACATCATTGCTACTGCAGGAAGTCTTGGCTACAATGCGCCAGAGCTTTCCAAGACAAAGAAACCTACAACAAAGACCGATGTTTACAGCCTCGGCGTTATCCTTTTGGAACTCTTAACTGGTAAACCGCCAGGGGAACCAACCAATGGAATGGACTTGCCTCAATGGGTTGCATCTATAGTTAAAGAAGAGTGGACCAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAACCATAGGAGACGAACTTCTTAATACATTGAAATTGGCTTTACACTGTGTTGATCCTTCACCTTCTGCAAGGCCAGAAGTTAAGCAAGTTTTGCAGCAACTAGAGGAGATTAAGCCAGAATTGGTTGAAGCTGAAGTTGACGATGATGGAGCTAAGGTTCAAACAAATGAATAA 612 0.4232 RGPEIIVEWPTRMKIAIGITNGLCCLHNQENIVHGNLTSSNILLDEQTNPHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLGVILLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPTIGDELLNTLKLALHCVDPSPSARPEVKQVLQQLEEIKPELVEAEVDDDGAKVQTNE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22710g00001 203 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 3 183 - -
Trme22710g00001 203 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22710g00001 203 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 2 187 - -
Trme22710g00001 203 Pfam Protein kinase domain 14 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22710g00001 203 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22710g00001 203 Gene3D Transferase(Phosphotransferase) domain 1 3 201 - -
Trme22710g00001 203 SUPERFAMILY Protein kinase-like (PK-like) 6 186 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22710g00001 Trme-Chr22710 155 766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22710g00001 1 185 Receptor kinase-like Gene Family AT3G51740 75.676 1.73e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme22710g00001 Pkinase 5.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22710g00001 - - gmx:100799290 366.311