Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22700g00001 ATGGCAAAACCACAACAACGTTATCGAGGTGTTCGTCAGAGACATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAGGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTGATGTGTGGACCAAAAGCACGTACCAATTTCCCATACAACCCAAATGGACCACAATCATCTTCATCTAAACTTCTTTCAGCTACTTTAACTGCAAAGCTAAATAAGTGTCACATGGCTTCTCTTTCCCTTCAAATGTCCAAACAACAATCACCACCACAAAAAGAACCACAACATGTTTCAACACAAAGTTTCAATTCTTCCATTAATAATAACACTTTTGTCTATGGTAATGACATTGGTGGAACAAGTGGTGAAACTAGTTTAATTAGATGGCTTGATGAAGGAAATAGCTTTGTTGGTTTTGAAGGTCAACAAGTTGAAGTTTCTAATCAACAATTTCAACCTGTTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTTGATTCTGGTTGTTCAATTGAG 570 0.3772 MAKPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMSKQQSPPQKEPQHVSTQSFNSSINNNTFVYGNDIGGTSGETSLIRWLDEGNSFVGFEGQQVEVSNQQFQPVLEDDHIEQMIQELLDSGCSIE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22700g00001 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trme22700g00001 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trme22700g00001 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Trme22700g00001 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trme22700g00001 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Trme22700g00001 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Trme22700g00001 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trme22700g00001 190 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Trme22700g00001 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Trme22700g00001 190 MobiDBLite consensus disorder prediction 96 116 - -
Trme22700g00001 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22700g00001 Trme-Chr22700 1 1229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22700g00001 1 189 AP2-EREBP Transcription Factor Family AT5G25190 59.585 5.70e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme22700g00001 AP2 8e-12 CL0081