Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22647g00001 GTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCGTTGGCATTAACAAATAGTATCACATCTGAGGCACTGCATGGCGATATATCTCAGCACCAGAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCAAATGATCCAGAGACTTTTGTACATCGTTCTGGTCGTACTGGCCGTGCAGGAAAGCTAGGTACTGCCATTCTGATGTACACGGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAAGATGTTTTGGAGGCATCTGCTGAGCAAGCTGTTGTCACACTTGATAGAGTTCATCCCGAGTCTATTGCATTTTTCACTCCAA 490 0.4245 VYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMYTGSQRRTVRSLERDVGCKFEFVNAPSMEDVLEASAEQAVVTLDRVHPESIAFFTP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22647g00001 163 Gene3D - 2 158 IPR027417 -
Trme22647g00001 163 CDD SF2_C_DEAD 4 108 - -
Trme22647g00001 163 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 147 - -
Trme22647g00001 163 FunFam Nucleolar RNA helicase II 1 163 - -
Trme22647g00001 163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 133 IPR027417 -
Trme22647g00001 163 Pfam Helicase conserved C-terminal domain 4 99 IPR001650 -
Trme22647g00001 163 SMART helicmild6 19 99 IPR001650 -
Trme22647g00001 163 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 140 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22647g00001 Trme-Chr22647 226 1305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22647g00001 7 121 Eukaryotic Initiation Factors Gene Family AT3G19760 37.931 4.39e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22647g00001 - - mcha:111024523 294.664