Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22643g00001 AAGGTGAATGCTTCAATGGCGAGAAGGGAAATGCTATCTTCTGGATCAGCATGCATGACAGGCAACCCGATTGACGATTGTTGGAAATGCGACCCAGAATGGCCAAACAATCGACAACGATTAGCAGATTGTGCAATAGGGTTTGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATATTATGTTGTAACAGATTCCTCAGATGATGATCCTGTTACCCCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAATGAACCATTGTGGATAGTGTTTCCTAGTAACATGTTGATTAAGCTAAAGCAAGAATTGATTTTTAATAGTTATAAGACTATTGATGGTCGTGGTGCTGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATAACAACACTTATAGCTTGTTTGGATGTGCGGTGCAATCAGTATTCTCGCGTCCCAATACAAAATTTGACGTGA 471 0.397 KVNASMARREMLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMLIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFITTLIACLDVRCNQYSRVPIQNLT 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22643g00001 156 PANTHER PECTATE LYASE 18-RELATED 7 137 IPR045032 GO:0030570
Trme22643g00001 156 Gene3D - 21 156 IPR012334 -
Trme22643g00001 156 SUPERFAMILY Pectin lyase-like 22 132 IPR011050 -
Trme22643g00001 156 PRINTS Pollen allergen Amb family signature 104 120 IPR018082 -
Trme22643g00001 156 PRINTS Pollen allergen Amb family signature 68 93 IPR018082 -
Trme22643g00001 156 PRINTS Pollen allergen Amb family signature 44 61 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22643g00001 Trme-Chr22643 256 812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22643g00001 1 134 Polysaccharide Lyase AT3G53190 76.259 3.43e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22643g00001 K01728 - gmx:100775595 248.054