Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme226400g00001 GCAAGGCAAAACGCGTTGTCACAGAACCAGCGCTGGCATGGTGAAGATGGTTCAGACGGTGGGCCTGGTTACAAAAGGTTCACTACGTTCTACTTTACAAATTTTCCAGAACATATTCAACAATTCCATTTGAGAAAAGCTTTTGAAGTCTGCGGGATTATGGAGAATGTGTTTGTGGCGCCGAAGCACAATGTTAACGGCCACCGGTATGGTTTTGTGAGATACTCAAAGGTTCGAGATGTGACTAAGTTGATGTATGCTGTTAATAACGTTAGTTTTGGCAATTATCGTATTTATGCGAAAGTTGCACGCTTTGATCGTGCGTATGGGAAAGGAGAGGAGGCTGAAGGTGGGGGAGGCTGTTGTGGATGA 372 0.4489 ARQNALSQNQRWHGEDGSDGGPGYKRFTTFYFTNFPEHIQQFHLRKAFEVCGIMENVFVAPKHNVNGHRYGFVRYSKVRDVTKLMYAVNNVSFGNYRIYAKVARFDRAYGKGEEAEGGGGCCG 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme226400g00001 123 Gene3D - 1 122 IPR012677 -
Trme226400g00001 123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 105 IPR000504 GO:0003723
Trme226400g00001 123 CDD RRM_SF 31 101 - -
Trme226400g00001 123 MobiDBLite consensus disorder prediction 1 20 - -
Trme226400g00001 123 SUPERFAMILY RNA-binding domain, RBD 8 111 IPR035979 GO:0003676
Trme226400g00001 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 98 IPR000504 GO:0003723
Trme226400g00001 123 SMART rrm1_1 29 101 IPR000504 GO:0003723
Trme226400g00001 123 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 28 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme226400g00001 Trme-Chr226400 1 372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme226400g00001 15 116 Eukaryotic Initiation Factors Gene Family AT1G22760 27.451 2.89e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme226400g00001 - K14787 mtr:120580570 117.087