Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme226184g00001 TATGCTTATACACTCCAAGTTGATGAAAAGAGTGACATTTACAGTTATGGAGTTGTGTTAATGGAAATTTTAAGTGGAAAACGTTCAGTGGATCAAGAATTTGGTGATGGGAACAGTATTGTGGATTGGGTTAGGTCCAAAATAAAGACCAAAGATGGAATTGAAGGTATATTGGACAAGAATGCAGAGGCAGGATGTAACACAGTAAGAGAAGAAATGATACAAATACTTAGAATTGCATTGCTTTGCACAAGTAGAAATCCAGCTGATAGACCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGAGGCTAAACCTAAGAGAAAATTGTTTGATAGTGTTGTT 345 0.3594 YAYTLQVDEKSDIYSYGVVLMEILSGKRSVDQEFGDGNSIVDWVRSKIKTKDGIEGILDKNAEAGCNTVREEMIQILRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLFDSVV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme226184g00001 115 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Trme226184g00001 115 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme226184g00001 115 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 105 - -
Trme226184g00001 115 SUPERFAMILY Protein kinase-like (PK-like) 3 104 IPR011009 -
Trme226184g00001 115 Pfam Protein tyrosine and serine/threonine kinase 6 99 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme226184g00001 Trme-Chr226184 62 406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme226184g00001 1 109 Receptor kinase-like Gene Family AT1G08590 53.211 4.94e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme226184g00001 PK_Tyr_Ser-Thr 4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme226184g00001 - - gmx:100813189 209.534