Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme225985g00001 CTTTCTGAAATTGAGAAAGCAACAGATAGGTTCAGTTCAAAAAGAGTATTGGGAGAAGGAGGATTTGGGCGTGTTTATCACGGGAGATTAAATGATGGAACTGATGTTGCAGTTAAGCTGCTAACAAGGGATATTCAGCAAAGTGGAGACCGTGAATTTACTGTGGAAGTTGAGATGCTATGCCGTTTGCATCATCGTAATCTTGTGAAACTCATCGGTATATGCACAGAAGGGCACATGCGATGCTTGGTGTATGAGCTTGTTTGCAATGCAGTGTTGAATCTCATTTGCATG 294 0.4184 LSEIEKATDRFSSKRVLGEGGFGRVYHGRLNDGTDVAVKLLTRDIQQSGDREFTVEVEMLCRLHHRNLVKLIGICTEGHMRCLVYELVCNAVLNLICM 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme225985g00001 98 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 87 - -
Trme225985g00001 98 ProSiteProfiles Protein kinase domain profile. 11 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme225985g00001 98 SUPERFAMILY Protein kinase-like (PK-like) 2 90 IPR011009 -
Trme225985g00001 98 PANTHER OS01G0750732 PROTEIN 1 92 - -
Trme225985g00001 98 ProSitePatterns Protein kinases ATP-binding region signature. 17 39 IPR017441 GO:0005524
Trme225985g00001 98 Pfam Protein tyrosine and serine/threonine kinase 13 93 IPR001245 GO:0004672|GO:0006468
Trme225985g00001 98 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme225985g00001 Trme-Chr225985 113 406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme225985g00001 2 91 Receptor kinase-like Gene Family AT5G56890 68.889 5.31e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme225985g00001 PK_Tyr_Ser-Thr 1.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme225985g00001 - - vvi:100265222 148.288