Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22596g00001 CTCACAAAAGCAGGAATACGTTTTGGTTTTGGTAACCCTGCTGGGGGACGGTACGATAAGTGTAAATCACTGAAGTACAATGCGGATCTTCCACCAGCTATACTTTCAAGGTTTGATCTTGTATACATTATGGTTGATGGCCTGGATGAAACAATAGATGCCAACATAGCTCAACATATCGTAAAAGTTCATCAAAAGTGTGATGATGCTCTTGATCCCGCATYTGCCACAGCAGAACTAAAGCGTTACATTGCCTATGCAAAAACTCTTAAACCAAAGGCAGTTGGAGGCATTAATCAGACTGTTACAGGCCACTGCACGGATATATTTGGAAAATCAGTTTCAAGAACTAAACAGGGAGGACGCCACAGAAAATACTGCCCCCAAGGGAAGAAAATTACTGTAAGTTATGAAAAATTTCAGAGGATTACTAGGGCCGTTATTGTGTGCTTTAGACAACACAAAGAGACTGTGAAGCGCCTTAGACAGCAGCAAGAGACTATGGTGTGGCCTAGGCAGAACGAAGAGACTGTGGTGCCCGTGCCCCCTGGACAGCACGAAGACTATCATTGCCATTACCATACTTCATAG 591 0.4349 LTKAGIRFGFGNPAGGRYDKCKSLKYNADLPPAILSRFDLVYIMVDGLDETIDANIAQHIVKVHQKCDDALDPAXATAELKRYIAYAKTLKPKAVGGINQTVTGHCTDIFGKSVSRTKQGGRHRKYCPQGKKITVSYEKFQRITRAVIVCFRQHKETVKRLRQQQETMVWPRQNEETVVPVPPGQHEDYHCHYHTS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22596g00001 196 Pfam MCM P-loop domain 12 64 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme22596g00001 196 ProSiteProfiles MCM family domain profile. 12 60 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme22596g00001 196 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 11 93 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme22596g00001 196 Gene3D - 8 163 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22596g00001 Trme-Chr22596 2 1204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22596g00001 1 93 Core DNA Replication Machinery Family AT5G44635 61.765 2.69e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22596g00001 K02542 - atri:130827677 130.954