Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme225550g00001 ATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAGTACTTATATTGTTCGGGAAGGAGATCCAGTCGATGAGATGCTTTTCATCATACGTGGACGCCTTGAGAGTGTAACCACGGATGGTGGGAGGAGTGGCTTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTAGACCCCAAATCTGGTTCTAATCTTCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAAACGTTTGCCTTAACTGCCGATGAGCTGAAATTTGTTGCCAGTCAGTTTAGGCGTCTTCACAGTAG 356 0.4522 MDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVETFALTADELKFVASQFRRLHS 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme225550g00001 118 ProSiteProfiles cAMP/cGMP binding motif profile. 1 81 IPR000595 -
Trme225550g00001 118 Gene3D Jelly Rolls 1 115 IPR014710 -
Trme225550g00001 118 FunFam Cyclic nucleotide-gated ion channel 1 1 113 - -
Trme225550g00001 118 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 118 - -
Trme225550g00001 118 CDD CAP_ED 1 116 IPR000595 -
Trme225550g00001 118 Pfam Cyclic nucleotide-binding domain 19 108 IPR000595 -
Trme225550g00001 118 SUPERFAMILY cAMP-binding domain-like 1 115 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme225550g00001 Trme-Chr225550 51 406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme225550g00001 1 118 Ion Channels AT1G19780 92.373 5.18e-74 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme225550g00001 K05391 - gmx:100820202 234.958