Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme225473g00001 GGTGACCAGAATGGTTCGCTACCTGTTAGGAAATGCATGCATTGTGAGATCACCAAAACACCACAATGGAGGGCAGGGCCAATGGGTCCAAAAACACTCTGCAATGCCTGCGGTGTTCGCTACAAGTCAGGCCGGCTTTTCCCTGAATACCGGCCTGCTGCTAGTCCAACTTTTTGTCCAGCTTTGCACTCCAATTCCCACAAGAAGGTCCTTGAAATGAGAGTCAAGGATATTGAGAATTCCGGTTTTGAATCACATTCCGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCATTCTCGCCCTGGAATACATTTGA 321 0.486 GDQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPALHSNSHKKVLEMRVKDIENSGFESHSAASPELIPNTNSILALEYI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme225473g00001 106 SMART GATA_3 6 56 IPR000679 GO:0006355|GO:0043565
Trme225473g00001 106 ProSitePatterns GATA-type zinc finger domain. 12 37 IPR000679 GO:0006355|GO:0043565
Trme225473g00001 106 CDD ZnF_GATA 11 58 IPR000679 GO:0006355|GO:0043565
Trme225473g00001 106 PANTHER GATA TRANSCRIPTION FACTOR 6 89 - -
Trme225473g00001 106 FunFam GATA transcription factor 2 87 - -
Trme225473g00001 106 ProSiteProfiles GATA-type zinc finger domain profile. 6 42 IPR000679 GO:0006355|GO:0043565
Trme225473g00001 106 Pfam GATA zinc finger 12 45 IPR000679 GO:0006355|GO:0043565
Trme225473g00001 106 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 10 69 - -
Trme225473g00001 106 Gene3D - 9 57 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme225473g00001 Trme-Chr225473 1 321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme225473g00001 8 100 C2C2-Gata Transcription Factor Family AT3G54810 73.118 5.99e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme225473g00001 GATA 8.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme225473g00001 - - lang:109354556 197.208