Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2253g00001 ATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCTAGTAAATCAGCATCAGCCTGCTCCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCTGGCGGGCCTGAAGACCAGAGATCAGCTGCGGGAGAGATCCGCCTTCTTGCAAAACGCAATGCAGATAACCGTGTAGCTATTGCTGAAGCTGGCGCAATACCTCTCCTTGTTGGTCTCCTCTCCGTGCCCGACTCCCGAACTCAAGAGCATGCTGTTACGGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGAAACATTGTTTCTTCAGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAGAGGGGAAGCATGGAAGCTCGGGAAAACGCAGCAGCAACACTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATATCACCACTAGTGACACTGCTGAGTGAAGGTACCCAAAGGGGTAAGAAAGACGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGAAACAAGGGAAAGGCAGTGAGGGCTGGTGTTATTCCCACGCTGATGCGATTACTGACAGAACCTGGCGGGGGAATGGTGGATGAAGCATTGGCCATTTTAGCCATTTTGTCTAGTCATCCAGAAGGGAAGGCTGCCATTGGGTCTGCTGAGGCAGTGCCGGTTTTGGTAGAGTTTATCGGGACTGGATCGCCAAGGAACAAAGAGAACGCAGCTGCTGTTTTAGTTCACCTTTGTTCTGGTGATCGACAATATATAGCACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTAGAATTAGCACAAAATGGTACCGACAGAGGCAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGCGAGCAGGAGCAGCAGGAAGTTCAGACGCAAACCGAACATCAAGCTCAGAACGATGATATCCAACCACCTTTGATCATTAACCTCGATATTGACACCTGA 1038 0.4836 IEQWCEANGIEPPKRPSTSEPSKSASACSPAERSKIESLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGNIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILSSHPEGKAAIGSAEAVPVLVEFIGTGSPRNKENAAAVLVHLCSGDRQYIAQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQQEVQTQTEHQAQNDDIQPPLIINLDIDT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2253g00001 345 FunFam RING-type E3 ubiquitin transferase 212 330 - -
Trme2253g00001 345 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 76 118 IPR000225 GO:0005515
Trme2253g00001 345 SMART arm_5 65 105 IPR000225 GO:0005515
Trme2253g00001 345 SMART arm_5 229 269 IPR000225 GO:0005515
Trme2253g00001 345 SMART arm_5 188 228 IPR000225 GO:0005515
Trme2253g00001 345 SMART arm_5 106 146 IPR000225 GO:0005515
Trme2253g00001 345 SMART arm_5 271 311 IPR000225 GO:0005515
Trme2253g00001 345 SMART arm_5 147 187 IPR000225 GO:0005515
Trme2253g00001 345 SUPERFAMILY ARM repeat 36 319 IPR016024 -
Trme2253g00001 345 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 241 IPR000225 GO:0005515
Trme2253g00001 345 MobiDBLite consensus disorder prediction 316 335 - -
Trme2253g00001 345 Coils Coil 299 319 - -
Trme2253g00001 345 Gene3D - 20 337 IPR011989 -
Trme2253g00001 345 PANTHER U BOX DOMAIN-CONTAINING 1 313 - -
Trme2253g00001 345 MobiDBLite consensus disorder prediction 1 33 - -
Trme2253g00001 345 MobiDBLite consensus disorder prediction 15 31 - -
Trme2253g00001 345 Pfam Armadillo/beta-catenin-like repeat 230 269 IPR000225 GO:0005515
Trme2253g00001 345 Pfam Armadillo/beta-catenin-like repeat 65 104 IPR000225 GO:0005515
Trme2253g00001 345 Pfam Armadillo/beta-catenin-like repeat 148 186 IPR000225 GO:0005515
Trme2253g00001 345 FunFam RING-type E3 ubiquitin transferase 21 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2253g00001 Trme-Chr2253 1694 2731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2253g00001 1 329 U-box Gene Family AT3G46510 78.419 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2253g00001 - - gmx:100812160 573.933