Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme225199g00001 CTTGAATCGAGCGGGGAAGCTGCGAAGCCAGTTAGGAAAGTTCCTGCCAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGAGGACCCGAGAATTCGCGCTGTAATTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTGGCTGAAATTAGGGAGCCAAACAGAGGAAATAGGCTCTGGTTAGGTACATTTCCAAATGCAGTCGGCGCCGCTCTTGCTTATGATGAAGCAGCGCGGGCAATGTATGGTGCTTGTGCGCGCCTGAACTTTCCTAATGTAGAACATTGGAGAATCCCGAGTCCATGA 312 0.4968 LESSGEAAKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPNAVGAALAYDEAARAMYGACARLNFPNVEHWRIPSP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme225199g00001 103 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Trme225199g00001 103 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Trme225199g00001 103 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 96 - -
Trme225199g00001 103 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Trme225199g00001 103 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Trme225199g00001 103 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Trme225199g00001 103 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Trme225199g00001 103 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Trme225199g00001 103 MobiDBLite consensus disorder prediction 1 35 - -
Trme225199g00001 103 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Trme225199g00001 103 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme225199g00001 Trme-Chr225199 1 403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme225199g00001 4 93 AP2-EREBP Transcription Factor Family AT2G40350 70.000 1.08e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme225199g00001 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme225199g00001 - K09286 gmx:100527471 182.956