Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme225183g00001 ATGGAGGAGCACTCAGAGCCGAGACCTGAGAAGGAATCGAAGGTCATGTCATCGACCTCTGAATCCAATGCTGAAGATTTACTTAATCTAAGCCTTGGCATTCAACCCAAGTCCTCTATCAAATCCTTGGAGATTGGTGAACATTCAAGTTCATCTCAAAATGTTGTTGTTGAACCTTTATCCCAGAACGTTGATGTCGAACCTTTATATGAGCAAAAGGTGGTGGAATTCCTTTGTCCTTATTGTGACAAGAAATATTCCACTTTTCAAGCACTTGGAGGACACCAAAACGCTCATAAGC 301 0.4186 MEEHSEPRPEKESKVMSSTSESNAEDLLNLSLGIQPKSSIKSLEIGEHSSSSQNVVVEPLSQNVDVEPLYEQKVVEFLCPYCDKKYSTFQALGGHQNAHK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme225183g00001 100 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 100 IPR044246 GO:0009788
Trme225183g00001 100 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Trme225183g00001 100 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 100 IPR013087 -
Trme225183g00001 100 MobiDBLite consensus disorder prediction 1 26 - -
Trme225183g00001 100 MobiDBLite consensus disorder prediction 1 15 - -
Trme225183g00001 100 Pfam C2H2-type zinc finger 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme225183g00001 Trme-Chr225183 42 342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme225183g00001 71 100 C2H2 Transcription Factor Family AT5G01860 63.333 1.68e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme225183g00001 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme225183g00001 - - tpra:123891784 116.316