Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22502g00001 ATGCGTAGGCTGCGTCATCCAAACGTTGTTCTTTTTATGGGTGCTGTCACCCGGCCTCCTAATCTCTCAATCATTTCAGAGTTTCTCCCGAGAGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATCGACGAGAAACAAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGTATGAATTGCTTGCACGCCAGCACACCTACAATTGTTCACCGAGATCTGAAGTCCCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCTTCAAATGAGAAGTGA 324 0.4599 MRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKPEWMAPEVLRNEPSNEK 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22502g00001 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 71 83 IPR008271 GO:0004672|GO:0006468
Trme22502g00001 107 Pfam Protein tyrosine and serine/threonine kinase 1 90 IPR001245 GO:0004672|GO:0006468
Trme22502g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22502g00001 107 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 103 - -
Trme22502g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Trme22502g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 1 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22502g00001 Trme-Chr22502 328 1175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22502g00001 1 107 MAP Kinase Kinase Kinase AT1G08720 72.308 9.79e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme22502g00001 PK_Tyr_Ser-Thr 2.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22502g00001 - - aprc:113870732 206.838