Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22494g00001 ATTAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCTTACACTTGCAACAACAACTAGTGAGGCATGGAGGGTCAACTGAAACAGCTAGAGTCTTCACTGTTGAGGAGCTAAACAAAGCAACCAACAACTTCGACGAAAGAAAGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAGTCCAAAATCAGTGATCCAAACCAAATTGAGCCGTTCATCAATGAAGTGATAGTGCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTCTTGGGTTGTTGTTTAGAAACAGAAGTTCCCTTGCTTGTTTATGAATTCATTCCCAATGGTACTGTTCATGATCATCTTCATGGTCAAAACCAAACTTTAAAGCTTACATGGAAAACAAGACTAAGAATAGCAAAAGAAACTGCTGGAGTCCTAGCATACTTGCATTCTACTGCTTCCACACCAATCATACATAGAGATGTGAAATCTACAAATATACTTCTAGATCGCAATCTCACCGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTGTTCCTATTGATCACAGTCAGATAACCACTCTAGTGCAGGGAACATTGGGGTATCTTGACCCAGAATATTTCCACACAAGTCACTTAACAGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTACTTACGGGAAAGCAGGCACTGTCTTTTAACAGGCCAGAGGAAGATAGAAACCTTGCAGTGTACTTTGTTTCTTCAATGAAAGAGGGTTGGTTACATCATATTTTGGACACAAATATAGATGAGGCGAATATTGAGCAACTAAAGGAAGTTGCCCATATTGCAGAAAGGTGTTTAAGGGTGAACGGTGACGAAAGACCTACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATATTAGTGATTGAAGAGCACAGTTGGGGAAGTGGCAATTTATCTTCAGAAGAGACTGATAACTTGCTAAGAACAGCGCCGTCCATCAATGGTGAAGACGGAGTCTATGGAAGTGGCACTAATTGTTCTGACTCATATAGCATAAACCAGATGTCAATGTCAACGATTGGTGGAAGATAA 1128 0.4007 IKLKEQFFQQNGGLHLQQQLVRHGGSTETARVFTVEELNKATNNFDERKILGQGGQGTVYKGVLQDKRIVAIKKSKISDPNQIEPFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTVHDHLHGQNQTLKLTWKTRLRIAKETAGVLAYLHSTASTPIIHRDVKSTNILLDRNLTAKVSDFGASRIVPIDHSQITTLVQGTLGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGKQALSFNRPEEDRNLAVYFVSSMKEGWLHHILDTNIDEANIEQLKEVAHIAERCLRVNGDERPTMKEVAMELEGILVIEEHSWGSGNLSSEETDNLLRTAPSINGEDGVYGSGTNCSDSYSINQMSMSTIGGR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22494g00001 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Trme22494g00001 375 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 318 IPR045274 GO:0007166
Trme22494g00001 375 Pfam Protein kinase domain 46 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22494g00001 375 Gene3D Phosphorylase Kinase; domain 1 12 120 - -
Trme22494g00001 375 SUPERFAMILY Protein kinase-like (PK-like) 27 314 IPR011009 -
Trme22494g00001 375 FunFam Wall-associated receptor kinase 2 121 337 - -
Trme22494g00001 375 Gene3D Transferase(Phosphotransferase) domain 1 121 329 - -
Trme22494g00001 375 ProSiteProfiles Protein kinase domain profile. 45 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22494g00001 375 FunFam Wall-associated receptor kinase 2 15 120 - -
Trme22494g00001 375 SMART serkin_6 45 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22494g00001 375 CDD STKc_IRAK 51 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22494g00001 Trme-Chr22494 182 1309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22494g00001 2 325 Receptor kinase-like Gene Family AT1G21230 62.883 1.30e-142 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trme22494g00001 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22494g00001 - - gmx:100798027 544.273