Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme224891g00001 ATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTCATTGCTAGTGATGCAACTTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTGATATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCATGGCTGGAACGACAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGGATCACAATCAG 238 0.4706 MNDRFPDATPEELIASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQS 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme224891g00001 79 CDD RING-H2_synoviolin 17 58 - -
Trme224891g00001 79 SMART ring_2 20 57 IPR001841 -
Trme224891g00001 79 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Trme224891g00001 79 SUPERFAMILY RING/U-box 2 64 - -
Trme224891g00001 79 PANTHER RING ZINC FINGER PROTEIN 1 70 - -
Trme224891g00001 79 ProSiteProfiles Zinc finger RING-type profile. 20 58 IPR001841 -
Trme224891g00001 79 Pfam Ring finger domain 19 58 IPR001841 -
Trme224891g00001 79 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 1 67 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme224891g00001 1 78 C3H Transcription Factor Family AT3G16090 86.585 3.44e-49 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme224891g00001 K10601 - gmx:100816441 165.622