Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22470g00001 ATGGCACTTGGGACAGCTAGAGCCTTAGAGTATTTGCATGAGCAATGTCAACCGCCAGTGGTACACAGAAATTTGAAGTCTGCCAATGTTCTCCTTGATGATGATCTATCTGTGCGTGTATCTGATTGTGGTTTAGCTCCATTGATAGCTTCAGGGTCTGTAACTCAGCTCTCGGGGAACCTGCAATCAACTTATGGTTATGGAGCTCCAGAATTTGAATCGGGAACTTACACTTACCAAAGCGATGTATACAGTGTCGGAGTAGTTATGTTAGAACTTTTGACTGGCCGTCAGTCCCATGACAGGACACGTCCACGAGGGGAGCAATTTCTTGCTAGATGGGCAATTCCCAAACTTCACGATATTGATGCATTATCAAAAATGGTTGATCCTTCTTTAAATGGAGTTTACCCTGCAAAGTCATTGTCCAATTTCGCCGACATTATTGCTCGATGCCTTCAG 462 0.4416 MALGTARALEYLHEQCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVTQLSGNLQSTYGYGAPEFESGTYTYQSDVYSVGVVMLELLTGRQSHDRTRPRGEQFLARWAIPKLHDIDALSKMVDPSLNGVYPAKSLSNFADIIARCLQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22470g00001 154 PANTHER OS07G0668900 PROTEIN 2 154 - -
Trme22470g00001 154 Pfam Protein kinase domain 3 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22470g00001 154 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1 154 - -
Trme22470g00001 154 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22470g00001 154 Gene3D Transferase(Phosphotransferase) domain 1 1 154 - -
Trme22470g00001 154 SUPERFAMILY Protein kinase-like (PK-like) 1 154 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22470g00001 Trme-Chr22470 381 1271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22470g00001 1 154 Strubbelig Receptor Gene Family AT4G03390 81.818 2.42e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme22470g00001 Pkinase 1.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22470g00001 - - mtr:25492087 299.286