Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22467g00001 TATTGCGAAGAAGGTGGAGAAAGACTTCTTGTTTACGAGTTCATGGCGCATGGATCTTTGTATCAACACCTTCATGGACCAAACCAAGTGTTGAAACAGGAGTTAAACTGGATAAGAAGGGTAACAATAGCAGTTCAAGCGGCTCGCGGGATCGAATATTTACACGGCTACGCTTGTCCACCGGTGATTCATAGAGACATTAAGTCCTCAAACATACTCATTGATGAAGAACACAATGCAAGAGTTTCTGATTTTGGTTTATCATTGTTAGGTCCTTTAGATAGTAATTCTCCACTTGCCGAACTACCAGCCGGAACTCTCGGTTACCTTGATCCTGAATACTATAGACTCCATTACCTCACAACAAAATCCGATGTCTATAGTTTTGGTGTTCTACTCTTGGAAATTCTAAGTGGTAGAAAAGCCATTGACATGATGCAATATGAAGAAGGTAATAACATAGTTGAATGGGCAGTGCCTTTGATCAAATCAGGTGATATATCTGCAATATTGGATCCAATTCTTAAACCACCTCGGGAAATCGAAGCGTTGAAAAAGATAGCTAATGTAGCTTGTAAATGTGTGAGAATGAGAGGTAAAGAGAGACCTTCAATGGACAAGGTAACAACTTCATTAGAAAGATCTCTTGCTGTGTTAATGGGTAGTCCATGCATTGATCAACCAATTTTACCTTCTGAGGTTGTTTTAGGAAGTAATAGAATGCATAGAAAATCATCTCAAATGTCTTCAAATAGGTCAGTTTCTGAAATTGAGGATCAAAGATTTGAGCTTAGAGCACCTTCATGGATAACATTTCCTAGTGTTGCATCTTCTCTAAGAAGAAAATCATCAATGTCAGAAGCAGATGTTGATGGAAAAATTGCAGAAATGAAGATTAACATTGGCAATGTTGGAGGGAGTAGTGATATGTTGAGAAGTTTAGAGGAAGAGATTGTACCTGCTTCACCACAAGAGAGGTTGTTTTTGGAACACAACTTTTAA 1002 0.3842 YCEEGGERLLVYEFMAHGSLYQHLHGPNQVLKQELNWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPLDSNSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMMQYEEGNNIVEWAVPLIKSGDISAILDPILKPPREIEALKKIANVACKCVRMRGKERPSMDKVTTSLERSLAVLMGSPCIDQPILPSEVVLGSNRMHRKSSQMSSNRSVSEIEDQRFELRAPSWITFPSVASSLRRKSSMSEADVDGKIAEMKINIGNVGGSSDMLRSLEEEIVPASPQERLFLEHNF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22467g00001 333 FunFam Receptor protein kinase CRINKLY4 15 219 - -
Trme22467g00001 333 Gene3D Transferase(Phosphotransferase) domain 1 15 219 - -
Trme22467g00001 333 Pfam Protein tyrosine and serine/threonine kinase 2 211 IPR001245 GO:0004672|GO:0006468
Trme22467g00001 333 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 242 IPR044815 GO:0004674
Trme22467g00001 333 SUPERFAMILY Protein kinase-like (PK-like) 1 212 IPR011009 -
Trme22467g00001 333 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22467g00001 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 62 74 IPR008271 GO:0004672|GO:0006468
Trme22467g00001 333 SMART serkin_6 1 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22467g00001 Trme-Chr22467 58 1059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22467g00001 1 333 Receptor kinase-like Gene Family AT3G59420 75.976 2.50e-173 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme22467g00001 PK_Tyr_Ser-Thr 1.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22467g00001 - - gmx:100797455 570.081