Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme224496g00001 ATGAATCGTGAAGTTGAGTTACGAAAGCTTCATGAGATTGCTATTGGAACGGCTAAAGTACCAAAGATAGCTGATTTTGGATTAGCGAAATTACGAAGTAGAGAAAGTAAAGTTGTTATGAATACTCACTTTAGAGGAACAAGAGGTTACGCCGCACCTGAAATGTGGAAGGCTTATCCTGTGACATATAAATGCGATGTTTATAGTTTCG 211 0.3791 MNREVELRKLHEIAIGTAKVPKIADFGLAKLRSRESKVVMNTHFRGTRGYAAPEMWKAYPVTYKCDVYSF 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme224496g00001 70 ProSiteProfiles Protein kinase domain profile. 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme224496g00001 70 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 20 70 - -
Trme224496g00001 70 Pfam Protein kinase domain 13 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme224496g00001 70 Gene3D Transferase(Phosphotransferase) domain 1 8 70 - -
Trme224496g00001 70 SUPERFAMILY Protein kinase-like (PK-like) 15 70 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme224496g00001 Trme-Chr224496 24 321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme224496g00001 21 70 Receptor kinase-like Gene Family AT5G38280 50.000 5.37e-11 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Trme224496g00001 Pkinase 4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme224496g00001 - - aprc:113852543 104.76