Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22422g00001 AATGATAGTGAAACTCCTATTGTGCACTGTGATCTAAAACCAAGCAATATTCTCCTGGATGAAGATATGACTGCAAAAGTTGGAGACTTTGGTTTGGCTAGGTTGCTTATTCAAAGATCAACTGATCAAGTTTCTATCAGCTCCACTCATGTTCTTAGGGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCAGGAGATGTATATAGTTTTGGGATAGTGTTACTAGAGCTCTTCTCTGGAAAAAGTCCACAAGATGATTGCTTCACAGGAGGCCTGAGCATAACAAAATGGGTGCAATATAACAAGAGTGTTCAAGTCATTGACCCTCATTTGCTATCTCTCATTTTACATGATGATCCTGCTAGAGAAGACTCCAATCTACAACTCATTTGTGTGGATGCAATTATGGGAGTTGCCATGTCCTGCACTGCAGACAATCCAGATGATCGCATTGGCATTAGAGTTGCTCTTCACCAACTAAAATCTGCTAGGGAAGACTCTCTTATGAAAAAATTCTAA 543 0.4052 NDSETPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTDQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPQDDCFTGGLSITKWVQYNKSVQVIDPHLLSLILHDDPAREDSNLQLICVDAIMGVAMSCTADNPDDRIGIRVALHQLKSAREDSLMKKF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22422g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 1 179 - -
Trme22422g00001 180 Pfam Protein kinase domain 7 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22422g00001 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 7 19 IPR008271 GO:0004672|GO:0006468
Trme22422g00001 180 ProSiteProfiles Protein kinase domain profile. 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22422g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 4 168 IPR011009 -
Trme22422g00001 180 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 171 - -
Trme22422g00001 180 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22422g00001 180 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22422g00001 Trme-Chr22422 2 966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22422g00001 4 174 Receptor kinase-like Gene Family AT3G47110 43.503 6.75e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme22422g00001 Pkinase 4.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22422g00001 - - tpra:123917063 350.517