Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme22417g00001 TCCAAGAACATTAGCAAGGATGGTTCATGGAGTAAGTATCTTGAAAATGGTAGTGGCGGTGGTAGAAAGGTTACTGCTTTGGAAACAGCCGAGGAATGGACTATTGACATGTCTAAGCTGTTTCTTGGCCATAAGTTCGCTCATGGCGCTCATAGTAGGCTGTATCATGGTGTATATAAGGATGAGTCTGTAGCTGTTAAAATCATTAGGGCACCCGACGACGATGAAAACGGAGACTTGACTGCTAAATTAGAGAATCAGTTCATTAGAGAGGTCACCCTTTTATCTCGCCTCCACCATCGAAATGTTATAAAGCGGCATTGCGGGGCGGGTGGTGCCCGTTATTGTAAGTTTGTAGCAGACCGGTTATCCGTAGTCACTGTGGAGTCCGCTATAGTGGAAAAAATCACAGCTTTCATAGCTGCAAGCAGAAACCCGCCGGTTCATTGTATTATCACAGAATATCTATCTGAAGGTTCCTTGAGGGCATTTTTGCATAAGTTGGAGCACAAAACTATTTCTCTCGAGAAGCTAATAGCTTTTGCTCTCGATATTGCTCGTGGAATGGCATATATACACTCTCAAGGTGTCATTCATAGAGATCTTAAACCAGAGAATGTCCTTATTGATGAAGACTTTCACCTTAAACTTGCTGATTTCGGCATTGCTTGTGAGGAGTCAGTCTGTGACTTATTGGCGGATGATCC 707 0.4342 SKNISKDGSWSKYLENGSGGGRKVTALETAEEWTIDMSKLFLGHKFAHGAHSRLYHGVYKDESVAVKIIRAPDDDENGDLTAKLENQFIREVTLLSRLHHRNVIKRHCGAGGARYCKFVADRLSVVTVESAIVEKITAFIAASRNPPVHCIITEYLSEGSLRAFLHKLEHKTISLEKLIAFALDIARGMAYIHSQGVIHRDLKPENVLIDEDFHLKLADFGIACEESVCDLLADDP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme22417g00001 236 Gene3D Transferase(Phosphotransferase) domain 1 125 231 - -
Trme22417g00001 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Trme22417g00001 236 Pfam Protein kinase domain 48 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22417g00001 236 SMART serkin_6 40 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22417g00001 236 PIRSF ILK 132 228 - -
Trme22417g00001 236 PIRSF ILK 7 111 - -
Trme22417g00001 236 ProSiteProfiles Protein kinase domain profile. 40 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme22417g00001 236 SUPERFAMILY Protein kinase-like (PK-like) 28 227 IPR011009 -
Trme22417g00001 236 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 226 - -
Trme22417g00001 236 Gene3D Phosphorylase Kinase; domain 1 28 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme22417g00001 Trme-Chr22417 1 1308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme22417g00001 6 236 MAP Kinase Kinase Kinase AT5G58950 57.143 1.13e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme22417g00001 Pkinase 6.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme22417g00001 - - vvo:131644953 326.25