Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme223859g00001 ATGAAAGGCCATGAAAGGCCATTAACATTCCTTAAGTACAACAGGGATGGTGATCTTCTATTTTCTTGCGCCAAGGACCACAACCCCACCGTGTGGTTTGCTGACAACGGGGAACGCTTAGGAACTTATCGAGGTCATAATGGTGCTGTTTGGTGTTGCGATGTCACAAGAGATTCGGGTCGACTCATTACTGGAAGCGCTGACCAGACGGCGAAGCTGTGGGATGTGCAAACTGGTCAACAGTTGTTCACCTTCAATTTTGATTCTCCCACAAGGTC 278 0.482 MKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVTRDSGRLITGSADQTAKLWDVQTGQQLFTFNFDSPTRS 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme223859g00001 93 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 42 IPR001680 GO:0005515
Trme223859g00001 93 SUPERFAMILY WD40 repeat-like 2 86 IPR036322 GO:0005515
Trme223859g00001 93 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 43 80 - -
Trme223859g00001 93 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 93 - -
Trme223859g00001 93 ProSitePatterns Trp-Asp (WD) repeats signature. 62 76 IPR019775 -
Trme223859g00001 93 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 84 IPR001680 GO:0005515
Trme223859g00001 93 Gene3D - 1 93 IPR015943 GO:0005515
Trme223859g00001 93 SMART WD40_4 1 33 IPR001680 GO:0005515
Trme223859g00001 93 SMART WD40_4 36 75 IPR001680 GO:0005515
Trme223859g00001 93 Pfam WD domain, G-beta repeat 38 75 IPR001680 GO:0005515
Trme223859g00001 93 Pfam WD domain, G-beta repeat 2 32 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme223859g00001 Trme-Chr223859 1 381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme223859g00001 1 93 Eukaryotic Initiation Factors Gene Family AT2G46280 86.022 5.13e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme223859g00001 K03246 - gmx:100793485 199.519