Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme223850g00001 ATGAGTGCAATTTTCATCGTTTACATGTGCCTTTTATGGTACACCACCACTCGTAACAACAACCGTTCTGATGGTACACCACCGATTAAGCCGGTCACTGATAAGGGTCTCTCTCCTTTAGATCTTGAAAAGCTACCTAAAATCACCGGTAAAGAATTGGTTGCATCCACCGAATGCGCTGTTTGCCTTGACGAAATCGATAATGAACAACCGGCTCGTCTGATTCCCGGTTGTAATCACGCTTTTCATGTCCAATGTGCTGACACGTGGCTATC 275 0.4509 MSAIFIVYMCLLWYTTTRNNNRSDGTPPIKPVTDKGLSPLDLEKLPKITGKELVASTECAVCLDEIDNEQPARLIPGCNHAFHVQCADTWLS 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme223850g00001 92 SUPERFAMILY RING/U-box 58 91 - -
Trme223850g00001 92 ProSiteProfiles Zinc finger RING-type profile. 59 92 IPR001841 -
Trme223850g00001 92 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 1 91 - -
Trme223850g00001 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 92 IPR013083 -
Trme223850g00001 92 Pfam RING-like zinc finger 58 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme223850g00001 Trme-Chr223850 134 408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme223850g00001 1 92 C3H Transcription Factor Family AT5G42200 56.842 2.47e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme223850g00001 K19037 - gmx:100811160 157.532