Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2237g00001 ATGGATAAAGCAAAGTACAAGAGTGTTATTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTTAGTGCGCTTGATGCCCACACTGGATCAGAATTATTCAGAGAGTATGTATTGTCAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCAAATCATACAGGCAGGAAAGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTTGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTAATCACTCCTCCTCGGAAGATTCAGATGAAAATGAGTCCTTGGATACATCTATTATGGCCATGAAGAAATCTATTTCTTCTGTAAATATTAACAGTTTGGCGAAGGAAGTTCACGAGGGATCATCAGATCTTAAAGAAATAAAGGAAAAGAAGAAGACAAAACGCTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGGGGTAGAGTCAACATGAAGGTGTACTTGTCTTACATGGCTGCCGCATATAAAGGCTTATTGATTCCCCTCATAATCATTGCACAATCATTATTTCAGTTCCTTCAGATAGCCAGCAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACGAACCCAAAGTAGCTCCCACAACTCTTCTTCTCGTTTACATGGCCCTTGCCTTTGGCAGCTCATGCTTCATATTTGTAAGGGCTGTTCTTGTGGCTACGTTTGGCCTAGCAGCAGCACAGAAGCTATTTTTCAACATGCTTAGAAGTATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCCTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACGATACAACTTATTGGTATTGTTGCAGTAATGTCAGAAGTTACATGGCAAGTTTTGCTCCTTGTAGTTCCAATGGCAATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCATCCACTATCAGAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACTTTTGTATTTGCTTTCTGCATGGTTTTACTTGTGA 1365 0.4073 MDKAKYKSVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLSALADKTVIFVTHQVEFLPAADMILVLKEGQIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPNHSSSEDSDENESLDTSIMAMKKSISSVNINSLAKEVHEGSSDLKEIKEKKKTKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQSLFQFLQIASNWWMAWANPQTEGDEPKVAPTTLLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGASTIRVLQLLSGSACAWNYFQLLYLLSAWFYL 454
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme2237g00001 454 FunFam ABC transporter C family member 5 199 432 - -
Trme2237g00001 454 Pfam ABC transporter 25 64 IPR003439 GO:0005524
Trme2237g00001 454 SUPERFAMILY ABC transporter transmembrane region 235 431 IPR036640 GO:0005524|GO:0016020
Trme2237g00001 454 Pfam ABC transporter transmembrane region 240 430 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme2237g00001 454 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 238 427 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme2237g00001 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 134 IPR027417 -
Trme2237g00001 454 CDD ABC_6TM_ABCC_D2 236 427 IPR044726 GO:0140359
Trme2237g00001 454 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 429 - -
Trme2237g00001 454 Gene3D - 1 159 IPR027417 -
Trme2237g00001 454 ProSitePatterns ABC transporters family signature. 37 51 IPR017871 GO:0005524|GO:0016887
Trme2237g00001 454 Gene3D ABC transporter type 1, transmembrane domain 160 432 IPR036640 GO:0005524|GO:0016020
Trme2237g00001 454 Coils Coil 190 213 - -
Trme2237g00001 454 FunFam Multidrug resistance associated protein, putative 1 69 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme2237g00001 Trme-Chr2237 72 2640 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2237g00001 25 170 Calmodulin-binding Proteins AT2G36910 33.557 7.57e-18 84.7